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The map label for this gene is ysdC [H]

Identifier: 148360902

GI number: 148360902

Start: 572916

End: 574040

Strand: Direct

Name: ysdC [H]

Synonym: LPC_2862

Alternate gene names: 148360902

Gene position: 572916-574040 (Clockwise)

Preceding gene: 148360903

Following gene: 148360901

Centisome position: 16.02

GC content: 41.51

Gene sequence:

>1125_bases
ATGATAAAGCATGCAATTCTTATTAGCGGATTGATTGTTTCCTTTTTAGCTTCAGCAGCTGAAATGTCGTTTCTAGCCCA
ATTGACGGAAGTACCTGGCGCCTCTGGGTACGAAAAAAATGTTCGTCATTTGGTACAAAAACAGTGGCAATCCTACATGG
CGGAGCTAAAGATCGATGGTATGGGTAATTTGATCGGCCAGCGTAAAGATAATCAGAAAGGACCGAAATTACTATTCATG
GCACATCTTGATGAAACGGGGTTTATGGTGGAATCCATAACACCTGATGGCTTTTTGAAAGTTATCCCTTTAGGCGGGAT
CGCAAACTCGGTCATCTATGCTCAACGCTGGACAGTTTCAACACCCAAAGGACCTGTATTAGCTTATTCTGGCATGGATT
CTCCGCATTTATTGGGTGATAAGAAAATGTTAGGGTCTCCTGATATCAATGCCCTGTTTTTAGATATCGGAGCAGAGAAT
AAAAAACAAGCTCAGAAAGAATTTGCAATCCAACCTGGCCTTGAAGTCACACCAGTAAGTGAATTTAGCCTATTAAGCAA
GAACAGATTTTTAGGCAAGGCCTTGGATGATCGCATAGGATTAGCTGTCATTAGTGACGCTCTGAGAGCAGTGAAACAAC
AACCCAATCAATTATATCTTGCTGCCACAGTGCAAGAGGAAGTTGGTATGCGGGGTGCCAGTACAGTATACAAAGCGACT
CATCCAGATATTGCAATTAATGTTGAAGTGGGAATCGCAGATGATTATCCAATGCTGCTGGCTGATAGAAAAGGTCGAAT
TGGTTTGGGGAAGGGACCATCCTTGTTTGTTTATGACAAATCAATGATTCCCAATCAGGAGTTAATTAACTGGATAATGG
AACTTGCTAATAAAAATAATATCCCGCTACAACTTGAGGTGGAGCCAGGATATGGTGAAGATGGCTCCAAGGTTCAGGCG
TCAGGCATGGGCGTTCCTGTCGTCAACATAGGTATCCCTATTCGATATGCACACCAACATGCCGGGATATTTGATAAAAG
AGATTACGATAATACAGTTAAATTGTTGAGGTTGATTGCTGAGAATTTGAATCAGGAAGTGGTTGACAAAATTAAAAAGA
GTTAA

Upstream 100 bases:

>100_bases
GCCCGGACTCAAGGCCGTTAACAAAATTTGAGCAGCGTGGTGAGCGTCTAGGCCATGGGGTATGGGATCTGGTTTTTATA
AAAAAATAAGGAAGTTACCT

Downstream 100 bases:

>100_bases
CAATATTTTGATCTCCCATTGTCCATTGTGTAATATTGGTGTCCTATAAATAGTTTATAAATAAAGGAAGTATTATTATG
GATTTTGTAAGTGAAATGAA

Product: endo-1,4 beta-glucanase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MIKHAILISGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQSYMAELKIDGMGNLIGQRKDNQKGPKLLFM
AHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVSTPKGPVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAEN
KKQAQKEFAIQPGLEVTPVSEFSLLSKNRFLGKALDDRIGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNNIPLQLEVEPGYGEDGSKVQA
SGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLRLIAENLNQEVVDKIKKS

Sequences:

>Translated_374_residues
MIKHAILISGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQSYMAELKIDGMGNLIGQRKDNQKGPKLLFM
AHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVSTPKGPVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAEN
KKQAQKEFAIQPGLEVTPVSEFSLLSKNRFLGKALDDRIGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNNIPLQLEVEPGYGEDGSKVQA
SGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLRLIAENLNQEVVDKIKKS
>Mature_374_residues
MIKHAILISGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQSYMAELKIDGMGNLIGQRKDNQKGPKLLFM
AHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVSTPKGPVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAEN
KKQAQKEFAIQPGLEVTPVSEFSLLSKNRFLGKALDDRIGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNNIPLQLEVEPGYGEDGSKVQA
SGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLRLIAENLNQEVVDKIKKS

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=353, Percent_Identity=33.4277620396601, Blast_Score=210, Evalue=1e-55,
Organism=Escherichia coli, GI1788727, Length=352, Percent_Identity=31.8181818181818, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87082417, Length=353, Percent_Identity=31.728045325779, Blast_Score=168, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 40950; Mature: 40950

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKHAILISGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQSYMAELKIDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEECC
MGNLIGQRKDNQKGPKLLFMAHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVS
CHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEECCCHHHEEEEEEEEEC
TPKGPVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAENKKQAQKEFAIQPGLEVTPVS
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEECCCH
EFSLLSKNRFLGKALDDRIGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCEEEEC
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNN
CCCEEEEEEEECCCCCCEEEECCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
IPLQLEVEPGYGEDGSKVQASGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLRLIA
CCEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEECHHHCCCCCCCCCHHHHHHHHHHH
ENLNQEVVDKIKKS
HHCCHHHHHHHHCC
>Mature Secondary Structure
MIKHAILISGLIVSFLASAAEMSFLAQLTEVPGASGYEKNVRHLVQKQWQSYMAELKIDG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHEEECC
MGNLIGQRKDNQKGPKLLFMAHLDETGFMVESITPDGFLKVIPLGGIANSVIYAQRWTVS
CHHHHCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCCEEEEEECCCHHHEEEEEEEEEC
TPKGPVLAYSGMDSPHLLGDKKMLGSPDINALFLDIGAENKKQAQKEFAIQPGLEVTPVS
CCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCEECCCH
EFSLLSKNRFLGKALDDRIGLAVISDALRAVKQQPNQLYLAATVQEEVGMRGASTVYKAT
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCEEEEC
HPDIAINVEVGIADDYPMLLADRKGRIGLGKGPSLFVYDKSMIPNQELINWIMELANKNN
CCCEEEEEEEECCCCCCEEEECCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
IPLQLEVEPGYGEDGSKVQASGMGVPVVNIGIPIRYAHQHAGIFDKRDYDNTVKLLRLIA
CCEEEEECCCCCCCCCEEEECCCCCEEEEECCCEEECHHHCCCCCCCCCHHHHHHHHHHH
ENLNQEVVDKIKKS
HHCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]