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The map label for this gene is nifU [H]

Identifier: 148360745

GI number: 148360745

Start: 733265

End: 733714

Strand: Direct

Name: nifU [H]

Synonym: LPC_2694

Alternate gene names: 148360745

Gene position: 733265-733714 (Clockwise)

Preceding gene: 148360746

Following gene: 148360744

Centisome position: 20.5

GC content: 42.67

Gene sequence:

>450_bases
ATGAGTATGGAGTTGCGGGAACTTTACCAGGAAATCATCATCGATCACAATCGTAATCCTCGTAACCACCATGCGATGGA
GGATGCGACCACCGAGGCGAAGGGGTTTAACCCTTTATGCGGAGATAAACTGACTGTTTACCTCAAGTTGCAGGGTGATT
TGATTCGTGATGTCAGTTTTATTGGATGTGGCTGTGCTATCTCACAAGCTTCTGCATCGTTAATGACCGATGCGTTAAAG
GGTAAATCAATTAAAGAAGCTCATGAACTATTTCATCGTGTTCATCGAATGCTAACACAAGAGGAAGAAGATTCTTTGGT
TTCCATGGATAAATTAACAGTTCTAGCCGGAGTTAAAGCATTCCCTGCGCGTGTAAAATGCGCCACTTTGGCGTGGCATA
CTTTGGAAGCAGCTTTAAACAAAGAAACAGAAGTGGTGAAAACAGAATAA

Upstream 100 bases:

>100_bases
ATGTTGCTGCGACCTCTCGTATTTCCATGTCCTTTTATAATACGTTTAAAGAAATTGATTATTGTATGGAAGCCTTACAA
CGAGTTAAAGAGGTATTCGC

Downstream 100 bases:

>100_bases
TGTTATGGCAATAGTGGCAGAGCTCGTGAAAGAGTTTGTCTGTATATTGCAAAATAGACCAGAGGCAGCTCATGTTTGGT
TTTAAGAAAAAACAGAGTAA

Product: nitrogen fixation protein NifU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIRDVSFIGCGCAISQASASLMTDALK
GKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKAFPARVKCATLAWHTLEAALNKETEVVKTE

Sequences:

>Translated_149_residues
MSMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIRDVSFIGCGCAISQASASLMTDALK
GKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKAFPARVKCATLAWHTLEAALNKETEVVKTE
>Mature_148_residues
SMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIRDVSFIGCGCAISQASASLMTDALKG
KSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKAFPARVKCATLAWHTLEAALNKETEVVKTE

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16666; Mature: 16535

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIRDVSF
CCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHH
IGCGCAISQASASLMTDALKGKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKA
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
FPARVKCATLAWHTLEAALNKETEVVKTE
CCCHHHHHHHHHHHHHHHHCCCCCEEECC
>Mature Secondary Structure 
SMELRELYQEIIIDHNRNPRNHHAMEDATTEAKGFNPLCGDKLTVYLKLQGDLIRDVSF
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCHHHHHHH
IGCGCAISQASASLMTDALKGKSIKEAHELFHRVHRMLTQEEEDSLVSMDKLTVLAGVKA
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
FPARVKCATLAWHTLEAALNKETEVVKTE
CCCHHHHHHHHHHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]