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The map label for this gene is ssb1 [H]

Identifier: 148360372

GI number: 148360372

Start: 1178825

End: 1179247

Strand: Reverse

Name: ssb1 [H]

Synonym: LPC_2310

Alternate gene names: 148360372

Gene position: 1179247-1178825 (Counterclockwise)

Preceding gene: 148360371

Following gene: 148360373

Centisome position: 32.97

GC content: 41.13

Gene sequence:

>423_bases
ATGACTGCATCTTTAAACCGAGTTCAATTAATTGGCAATCTTGGTGCTGATCCCAAAATCGTCACTGGAAAAGATGGACA
ATCTTTTGTCACAGCTACTTTGGCTACCAATGAATCATTCAAACAGAATGATGAATGGCAGACCAGAGTGGAATGGCATC
AGCTGGTACTATTTGGAAAGCTAACCAAAGTCGCTGAGTATTTAAAGAAAGGTTCACATGTATACCTAGAAGGTAAACTG
CGTTCTAATCAATGGACAGACAACGAAGGCAAAGCACGTCAAGCCTTAAGCATTATTGTCAACCATATTCAGCTACTCAG
CTCACCCAAATCAGCTGATGAATCTAGCAACAAAACCGCAGAACAGCACATGGCGCAAATGCGTGAAATGTTGCAACCGG
ATTCAGAAGAAATTCCGTTTTAA

Upstream 100 bases:

>100_bases
TTGAAACAAATTAAGTCTTATCCGCATAACAGAAAACCACCTGCCTATGCGGATGTTTTTCTGTTATACCGCTCAGATTT
AACAATAACAGGAGAATACA

Downstream 100 bases:

>100_bases
TCATACCCTACCACGGGAGCAAGCTCCCGTGTGGGATTGCTCCCTTAATACAAGGAGATAATCCCATGGACACCCCTTCA
ATCTACGTCGCGTGTTTAGC

Product: single strand DNA binding protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1 [H]

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MTASLNRVQLIGNLGADPKIVTGKDGQSFVTATLATNESFKQNDEWQTRVEWHQLVLFGKLTKVAEYLKKGSHVYLEGKL
RSNQWTDNEGKARQALSIIVNHIQLLSSPKSADESSNKTAEQHMAQMREMLQPDSEEIPF

Sequences:

>Translated_140_residues
MTASLNRVQLIGNLGADPKIVTGKDGQSFVTATLATNESFKQNDEWQTRVEWHQLVLFGKLTKVAEYLKKGSHVYLEGKL
RSNQWTDNEGKARQALSIIVNHIQLLSSPKSADESSNKTAEQHMAQMREMLQPDSEEIPF
>Mature_139_residues
TASLNRVQLIGNLGADPKIVTGKDGQSFVTATLATNESFKQNDEWQTRVEWHQLVLFGKLTKVAEYLKKGSHVYLEGKLR
SNQWTDNEGKARQALSIIVNHIQLLSSPKSADESSNKTAEQHMAQMREMLQPDSEEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=114, Percent_Identity=38.5964912280702, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790494, Length=101, Percent_Identity=47.5247524752475, Blast_Score=99, Evalue=1e-22,
Organism=Drosophila melanogaster, GI85725234, Length=103, Percent_Identity=33.9805825242718, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24647376, Length=103, Percent_Identity=33.9805825242718, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15756; Mature: 15625

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASLNRVQLIGNLGADPKIVTGKDGQSFVTATLATNESFKQNDEWQTRVEWHQLVLFGK
CCCCCCHHHEEECCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LTKVAEYLKKGSHVYLEGKLRSNQWTDNEGKARQALSIIVNHIQLLSSPKSADESSNKTA
HHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
EQHMAQMREMLQPDSEEIPF
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TASLNRVQLIGNLGADPKIVTGKDGQSFVTATLATNESFKQNDEWQTRVEWHQLVLFGK
CCCCCHHHEEECCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH
LTKVAEYLKKGSHVYLEGKLRSNQWTDNEGKARQALSIIVNHIQLLSSPKSADESSNKTA
HHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
EQHMAQMREMLQPDSEEIPF
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]