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The map label for this gene is ybeQ [H]

Identifier: 148360275

GI number: 148360275

Start: 1273647

End: 1274675

Strand: Direct

Name: ybeQ [H]

Synonym: LPC_2212

Alternate gene names: 148360275

Gene position: 1273647-1274675 (Clockwise)

Preceding gene: 148360279

Following gene: 148360270

Centisome position: 35.61

GC content: 44.12

Gene sequence:

>1029_bases
ATGCGTTTACGTCTTGTCATCTTAGTTTTAGCCGCAATTATTATTGGTGTGGGAAGTTATTCTGGGATAGTGAATGTCAT
TAAAGAGCCCATAGAAAATGTGATAATAGGGTATAAAAGCCCATCAGCCTGGAATAATCGTGGTGTAGATTATGTGATTG
GCAAAAGAGTAGCACAAAATGACTCTGAAGCTGTAAAATGGTTTTGCAAGGCAGCGAAACAAGGCGAAGCCATGGCCCAG
CGCAACCTTGGCTTGATGTATGCTGCAGGCAAAGGGGTCCCTCAGGATAATGGCAAGGCTATGCAATGGTTTCGTAAAGC
CGCTCTTCAAAATGATGCCGTGTCACAATTAAATCTTGGTGTCATGTATCAAAAAGGTATGGGTACTCAGCAAAACGATA
GGGAAGCAATCAAGTGGATTCATAAAGCAGCCGCACAAGGATTTCCAGAGGCTGAACGTAGTCTTGGCATCCTATATTCC
ACTGCTGAAAATGGGCAACAAAATTATGTCGAAGCTTTTAAATGGCTTCACAAGGCAGCTGAGAAAGAAGATGCCATAGC
CCAATATAATCTTGCAGTTATGTATGTCACAGGCAAGGGGGTTCGGCAAAATGATACGGAAGCAGTTAAGTGGTTTCGTA
AAGCAGGCAAACATGGCGATCTCATGGCTCAACGAACACTTGGATTAATGTACGCAACGGGGAGCAATGTTCAACAGGAT
GATTTTCAAGCGATGAAATGGTTTCGTCTGGCCGCGAAACAAGGAGATGCTGTGGCTCAATATAATATAGGTATGGGCTT
TCTTAACGGCAAAGGGGTGATTCGAAATCACACAAAAGCTCTGAAATGGTTTCATTTAGCTGCTAGTCAAGGATTGCCCC
AAGCTCAATATGTGCTTGCTGCACTTTATCATGATGGAGTGAGTCTTCCTCAAAATAGTATGGAAGCAATAAAGTGGCTC
CGAAAGGCTGCTGCGCAAGGTCACTTGCAAGCTCAAGAGCGCCTGCAGGCTCTGGTTAGACAGGATTAG

Upstream 100 bases:

>100_bases
CCTTTTTGTCATAATAGAGCTCAGTCAACAGAATAACTTATTATGAGGTTGGAGACTCATTTTAGTTTTTATTAACGACT
CTAACAAGGATTAGTTTAGT

Downstream 100 bases:

>100_bases
CTGTGAGGCGGTTCCTCTTTCATTATCATACGAGTTAGTATTTATCCCCCTATGCTGAAAATAACGATTTGATTATTTCA
ATGAGAAATTATTTAAACAT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRLRLVILVLAAIIIGVGSYSGIVNVIKEPIENVIIGYKSPSAWNNRGVDYVIGKRVAQNDSEAVKWFCKAAKQGEAMAQ
RNLGLMYAAGKGVPQDNGKAMQWFRKAALQNDAVSQLNLGVMYQKGMGTQQNDREAIKWIHKAAAQGFPEAERSLGILYS
TAENGQQNYVEAFKWLHKAAEKEDAIAQYNLAVMYVTGKGVRQNDTEAVKWFRKAGKHGDLMAQRTLGLMYATGSNVQQD
DFQAMKWFRLAAKQGDAVAQYNIGMGFLNGKGVIRNHTKALKWFHLAASQGLPQAQYVLAALYHDGVSLPQNSMEAIKWL
RKAAAQGHLQAQERLQALVRQD

Sequences:

>Translated_342_residues
MRLRLVILVLAAIIIGVGSYSGIVNVIKEPIENVIIGYKSPSAWNNRGVDYVIGKRVAQNDSEAVKWFCKAAKQGEAMAQ
RNLGLMYAAGKGVPQDNGKAMQWFRKAALQNDAVSQLNLGVMYQKGMGTQQNDREAIKWIHKAAAQGFPEAERSLGILYS
TAENGQQNYVEAFKWLHKAAEKEDAIAQYNLAVMYVTGKGVRQNDTEAVKWFRKAGKHGDLMAQRTLGLMYATGSNVQQD
DFQAMKWFRLAAKQGDAVAQYNIGMGFLNGKGVIRNHTKALKWFHLAASQGLPQAQYVLAALYHDGVSLPQNSMEAIKWL
RKAAAQGHLQAQERLQALVRQD
>Mature_342_residues
MRLRLVILVLAAIIIGVGSYSGIVNVIKEPIENVIIGYKSPSAWNNRGVDYVIGKRVAQNDSEAVKWFCKAAKQGEAMAQ
RNLGLMYAAGKGVPQDNGKAMQWFRKAALQNDAVSQLNLGVMYQKGMGTQQNDREAIKWIHKAAAQGFPEAERSLGILYS
TAENGQQNYVEAFKWLHKAAEKEDAIAQYNLAVMYVTGKGVRQNDTEAVKWFRKAGKHGDLMAQRTLGLMYATGSNVQQD
DFQAMKWFRLAAKQGDAVAQYNIGMGFLNGKGVIRNHTKALKWFHLAASQGLPQAQYVLAALYHDGVSLPQNSMEAIKWL
RKAAAQGHLQAQERLQALVRQD

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=295, Percent_Identity=30.1694915254237, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI151301150, Length=288, Percent_Identity=29.8611111111111, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI217330658, Length=181, Percent_Identity=28.7292817679558, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI217330656, Length=181, Percent_Identity=28.7292817679558, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI33620759, Length=292, Percent_Identity=25.3424657534247, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87081769, Length=268, Percent_Identity=36.5671641791045, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786867, Length=119, Percent_Identity=35.2941176470588, Blast_Score=75, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17563256, Length=292, Percent_Identity=29.1095890410959, Blast_Score=98, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6319410, Length=291, Percent_Identity=28.8659793814433, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI21355295, Length=285, Percent_Identity=31.5789473684211, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 37912; Mature: 37912

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRLVILVLAAIIIGVGSYSGIVNVIKEPIENVIIGYKSPSAWNNRGVDYVIGKRVAQN
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHCC
DSEAVKWFCKAAKQGEAMAQRNLGLMYAAGKGVPQDNGKAMQWFRKAALQNDAVSQLNLG
HHHHHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
VMYQKGMGTQQNDREAIKWIHKAAAQGFPEAERSLGILYSTAENGQQNYVEAFKWLHKAA
EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCHHHHHHHHHHHHHHH
EKEDAIAQYNLAVMYVTGKGVRQNDTEAVKWFRKAGKHGDLMAQRTLGLMYATGSNVQQD
HHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHEEEECCCCCCHH
DFQAMKWFRLAAKQGDAVAQYNIGMGFLNGKGVIRNHTKALKWFHLAASQGLPQAQYVLA
HHHHHHHHHHHHHCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ALYHDGVSLPQNSMEAIKWLRKAAAQGHLQAQERLQALVRQD
HHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRLRLVILVLAAIIIGVGSYSGIVNVIKEPIENVIIGYKSPSAWNNRGVDYVIGKRVAQN
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHCC
DSEAVKWFCKAAKQGEAMAQRNLGLMYAAGKGVPQDNGKAMQWFRKAALQNDAVSQLNLG
HHHHHHHHHHHHHCCHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
VMYQKGMGTQQNDREAIKWIHKAAAQGFPEAERSLGILYSTAENGQQNYVEAFKWLHKAA
EEEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCHHHHHHHHHHHHHHH
EKEDAIAQYNLAVMYVTGKGVRQNDTEAVKWFRKAGKHGDLMAQRTLGLMYATGSNVQQD
HHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHEEEECCCCCCHH
DFQAMKWFRLAAKQGDAVAQYNIGMGFLNGKGVIRNHTKALKWFHLAASQGLPQAQYVLA
HHHHHHHHHHHHHCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ALYHDGVSLPQNSMEAIKWLRKAAAQGHLQAQERLQALVRQD
HHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]