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The map label for this gene is cph2 [H]

Identifier: 148360135

GI number: 148360135

Start: 2904713

End: 2906410

Strand: Reverse

Name: cph2 [H]

Synonym: LPC_2066

Alternate gene names: 148360135

Gene position: 2906410-2904713 (Counterclockwise)

Preceding gene: 148360133

Following gene: 148360138

Centisome position: 81.26

GC content: 39.63

Gene sequence:

>1698_bases
ATGATAGCAAAGAGTAAAACGGACATGAATAGAATACAGATGGGAACAAATAAAGAGTTCCCAAGCAAATCACACCTCAA
ACCGTCAAAATCTTGTGGAACTGATGGCTCCAATTTTCAGGTTGAGTTTTTATTGGATGTTATACAAAAACTTTCTCTTG
CAAAAGATCTGGAAACAATCATGTTCATTGTACGTAAGGCCGCTCGTACATTGACTGGAGCTGACGGTTCGACCTTTGTA
TTGCGTGATGGCAACCAATGCTATTACGCGGAGGAAGATGCAATTGCCCTTCTTTGGAAAGGCAAACGATTCCCTATGAG
TGCTTGTATCAGCGGTTGGGTTATGGAACATCGACAGTCGGTCATTATTGAAGATATTTATTCTGATCCAAGAATTCCCA
TTGATGCTTATCGGCCGACTTTTGTAAAGAGTTTGGCGATGGTTCCTATCAGAACAGCAGCCCCTTTGGGTGCCATTGGA
ATTTATTGGGCAGAATATTACTTTCCTACAGAGGAACAATTAAATTGGTTGCAGGTACTGGCTGACAGCACATCTGTTGC
AATGGAAAATGTGATGCTGCAATCAGAATTGGAGAAAGGCCAGAAAGAAACAACTGCTCAAATAGAAATGACTAGGAAAT
TAATGGAGGTCAATAAAAATCTTGAATGTGCCTTATATGAATTAAACCACCGCAATAAAGAAATGCAATGGTTGAAGGAG
TTAAGTTCAACATTGCAAACCTGTTTATATATCAAGGAGGCCTATCATTTAATTGCTCTGTATGCGGCTAAATTATTACC
TGAGTCATCAGGAATTTTCTATGTCATGCATCCCTCACGTAATTATCTTGAGGCTATGAGCTCATGGGGAGACTCTTTGA
TAGAAGAAAGGATCATTAAGCCAGATGATTGCCTGGGTTTGCGTCGTGGCTCGATTTATACAGTAGAAGAGCCGCAAAGA
GACTTAATATGCCCCCATCATAAAATCAACAGTAATTTAAAGCCTTATACCTGTATTCCTTTATTTGCTCAGAGCGATAT
TCTCGGTTTGGTTTGTATGGAATGGAAATCTTTTAAAAAGGAAGCAGAGGAACAAATCAATAAAGAAAATAATCAGGAAA
TTCTCGCAAGTATGATGGCAGAGCAAATAGCGCTTGGTATTTCCAATATTATGCTGCGTGAAACTTTGCGTAACCAATCT
TTACGGGATGTTCTCTCAGGGCTTTATAATCGACGTTATTTGAATGAAGTGCTGGATCGAGAATTAAACCGCTGTGCAAG
AAAATCATTATCACTTGCCGTGTTAATGTTGGATATTGATCATTTTAAACAGTTTAATGATAAATTCGGACATGAAGCGG
GTGATATGGTGATACAGGCTTTTGCTAATGTTTTGCGTCAGGTTACCCGAAAGGAGGATATAGCCTGCCGCTATGGAGGG
GAAGAATTTATCCTGATCATACCAGAGATTGATCTGGAAGCAGCCTTACAAAGGGCTCAATCTATTCATGATGCAGTCAG
TCGTATACATTTGCGTTATGGGGGTAATGCTTTAACTCAAATCACAATTTCCATAGGATTAACTATGTACCCTGCGCACG
GTAACGATATGCAAGACCTTATTACCGCCGCCGATAATGCACTTTATGAAGCCAAAAACTCAGGACGCAATAAAACGGTG
TTGTATCATAAAAATTAG

Upstream 100 bases:

>100_bases
TGAAAATTTAAGTTACTAGACAACTTATAGAGAGGAGTGATCCAAAGGATGTTTTGTTTAAAAAACACCCATTTGGTATT
ATAATTACAAAGAGACAAGG

Downstream 100 bases:

>100_bases
GGTATTTTATTTGCAATCAAAATATATTAGCTCCCGGCCTTATTCAATCTATTAAGGCTATGCTTGGCTATTTCTGTAAT
GAATTTGCGATAGAGCAACC

Product: sensor histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MIAKSKTDMNRIQMGTNKEFPSKSHLKPSKSCGTDGSNFQVEFLLDVIQKLSLAKDLETIMFIVRKAARTLTGADGSTFV
LRDGNQCYYAEEDAIALLWKGKRFPMSACISGWVMEHRQSVIIEDIYSDPRIPIDAYRPTFVKSLAMVPIRTAAPLGAIG
IYWAEYYFPTEEQLNWLQVLADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
LSSTLQTCLYIKEAYHLIALYAAKLLPESSGIFYVMHPSRNYLEAMSSWGDSLIEERIIKPDDCLGLRRGSIYTVEEPQR
DLICPHHKINSNLKPYTCIPLFAQSDILGLVCMEWKSFKKEAEEQINKENNQEILASMMAEQIALGISNIMLRETLRNQS
LRDVLSGLYNRRYLNEVLDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTV
LYHKN

Sequences:

>Translated_565_residues
MIAKSKTDMNRIQMGTNKEFPSKSHLKPSKSCGTDGSNFQVEFLLDVIQKLSLAKDLETIMFIVRKAARTLTGADGSTFV
LRDGNQCYYAEEDAIALLWKGKRFPMSACISGWVMEHRQSVIIEDIYSDPRIPIDAYRPTFVKSLAMVPIRTAAPLGAIG
IYWAEYYFPTEEQLNWLQVLADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
LSSTLQTCLYIKEAYHLIALYAAKLLPESSGIFYVMHPSRNYLEAMSSWGDSLIEERIIKPDDCLGLRRGSIYTVEEPQR
DLICPHHKINSNLKPYTCIPLFAQSDILGLVCMEWKSFKKEAEEQINKENNQEILASMMAEQIALGISNIMLRETLRNQS
LRDVLSGLYNRRYLNEVLDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTV
LYHKN
>Mature_565_residues
MIAKSKTDMNRIQMGTNKEFPSKSHLKPSKSCGTDGSNFQVEFLLDVIQKLSLAKDLETIMFIVRKAARTLTGADGSTFV
LRDGNQCYYAEEDAIALLWKGKRFPMSACISGWVMEHRQSVIIEDIYSDPRIPIDAYRPTFVKSLAMVPIRTAAPLGAIG
IYWAEYYFPTEEQLNWLQVLADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
LSSTLQTCLYIKEAYHLIALYAAKLLPESSGIFYVMHPSRNYLEAMSSWGDSLIEERIIKPDDCLGLRRGSIYTVEEPQR
DLICPHHKINSNLKPYTCIPLFAQSDILGLVCMEWKSFKKEAEEQINKENNQEILASMMAEQIALGISNIMLRETLRNQS
LRDVLSGLYNRRYLNEVLDRELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDLITAADNALYEAKNSGRNKTV
LYHKN

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=34.8837209302326, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=33.5329341317365, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=37.7906976744186, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=34.7058823529412, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI87082007, Length=174, Percent_Identity=34.4827586206897, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787802, Length=192, Percent_Identity=30.7291666666667, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI1787816, Length=191, Percent_Identity=34.5549738219895, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=32.3353293413174, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1788381, Length=175, Percent_Identity=30.8571428571429, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081974, Length=217, Percent_Identity=26.7281105990783, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=28.0701754385965, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=189, Percent_Identity=30.1587301587302, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081977, Length=197, Percent_Identity=26.3959390862944, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 64398; Mature: 64398

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKSKTDMNRIQMGTNKEFPSKSHLKPSKSCGTDGSNFQVEFLLDVIQKLSLAKDLETI
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MFIVRKAARTLTGADGSTFVLRDGNQCYYAEEDAIALLWKGKRFPMSACISGWVMEHRQS
HHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHH
VIIEDIYSDPRIPIDAYRPTFVKSLAMVPIRTAAPLGAIGIYWAEYYFPTEEQLNWLQVL
HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LSSTLQTCLYIKEAYHLIALYAAKLLPESSGIFYVMHPSRNYLEAMSSWGDSLIEERIIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PDDCLGLRRGSIYTVEEPQRDLICPHHKINSNLKPYTCIPLFAQSDILGLVCMEWKSFKK
CCHHCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
EAEEQINKENNQEILASMMAEQIALGISNIMLRETLRNQSLRDVLSGLYNRRYLNEVLDR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
HHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECC
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDL
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCHHHH
ITAADNALYEAKNSGRNKTVLYHKN
HHHHHHHHHHHHCCCCCCEEEEECC
>Mature Secondary Structure
MIAKSKTDMNRIQMGTNKEFPSKSHLKPSKSCGTDGSNFQVEFLLDVIQKLSLAKDLETI
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MFIVRKAARTLTGADGSTFVLRDGNQCYYAEEDAIALLWKGKRFPMSACISGWVMEHRQS
HHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHH
VIIEDIYSDPRIPIDAYRPTFVKSLAMVPIRTAAPLGAIGIYWAEYYFPTEEQLNWLQVL
HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
ADSTSVAMENVMLQSELEKGQKETTAQIEMTRKLMEVNKNLECALYELNHRNKEMQWLKE
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
LSSTLQTCLYIKEAYHLIALYAAKLLPESSGIFYVMHPSRNYLEAMSSWGDSLIEERIIK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PDDCLGLRRGSIYTVEEPQRDLICPHHKINSNLKPYTCIPLFAQSDILGLVCMEWKSFKK
CCHHCCCCCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
EAEEQINKENNQEILASMMAEQIALGISNIMLRETLRNQSLRDVLSGLYNRRYLNEVLDR
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
ELNRCARKSLSLAVLMLDIDHFKQFNDKFGHEAGDMVIQAFANVLRQVTRKEDIACRYGG
HHHHHHHHHHHHEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECC
EEFILIIPEIDLEAALQRAQSIHDAVSRIHLRYGGNALTQITISIGLTMYPAHGNDMQDL
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCCCHHHH
ITAADNALYEAKNSGRNKTVLYHKN
HHHHHHHHHHHHCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]