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The map label for this gene is ykoU [H]

Identifier: 148360043

GI number: 148360043

Start: 2994535

End: 2995425

Strand: Reverse

Name: ykoU [H]

Synonym: LPC_1974

Alternate gene names: 148360043

Gene position: 2995425-2994535 (Counterclockwise)

Preceding gene: 148360042

Following gene: 148360045

Centisome position: 83.75

GC content: 37.26

Gene sequence:

>891_bases
ATGATGATTGAAAAGGTTGAAATTACTCATCCTGATAAGATGATATTTTCTGGCGCCCAAATTTCAAAAAGCGAGGTAGC
TGAGTATTACAGCCGAATAGCAAATTTTATTTTACCCTGGGTAAATGAACGACCGGTAACCTTAAAGTGTTATCCTAATG
GAATCAATAAGGAAGGTTTTTTTATAAAGCATGCGCCAGATTATTTTTCAGATTCCATTCATCGTGTTTCTATCCCGCTG
AAAAAAACTGATGCGCATATTGAAATGATCAGGATTGATAAAGCGGAAGATCTGGTTTATCTCGTTGAGCAAAATACAAT
AGAATTGCATATACCCTTAGCAAAAATAACGGATGTTAAAAAACCGGATCAAATTGTTCTGGATCTGGATCCGTCAGATG
ATGATTTTGAGAAGGTACGGCATGCCGCTTTATTGTTAAAAGAAATCCTCGATTTGTTACAATTGCCCGCATTTATAAAA
ACGACCGGTTCACGTGGTGTACATATTCATATTCCGATAAAACCTTACTATTCTTTTCTTGAAATAAAAGCCATTACAAA
ACAAATAGCAGAGCGATTGCATCAGCAATCCACTGATACAACGACTCTCGAGCAACGCAAAAATAAACGCGGTAACAAGG
TATTTATTGACTATTTGAGAAATGATTATGGAATGACAGCAGTTGCACCTTATTCACTAAGAGCACTTGAAAATGCACCT
ATAGCGACTCCAATTGACTGGAGCGAATTGCAAGACAATGCTCTTGGTCCCCGCAGCTATCATTTAAAAAATATATTTCG
TCGCCTTGCACAAAAACAAGATCCATGGGCGAATTTTGTGCAAAGCTCTGTTGCTATTCAATGCCGGGATATTGGGAGCA
ATATTTTTTAA

Upstream 100 bases:

>100_bases
CAGTAACTCAAGCCTGCATCATGACATAATTTTTCGATTTAAAACGATTTTTCTGCTTTAATAAAATTGAAAAGAAATTG
GAAATTCCAGGGTACTCGCT

Downstream 100 bases:

>100_bases
AACATTTGGACAAGAATCCAAAGAATATTAAAATAAATCAGTTACTTATCTAGTTTGCATCAATTTCTGTCAATGTTGGT
TTAATCCCTCTATTTTTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MMIEKVEITHPDKMIFSGAQISKSEVAEYYSRIANFILPWVNERPVTLKCYPNGINKEGFFIKHAPDYFSDSIHRVSIPL
KKTDAHIEMIRIDKAEDLVYLVEQNTIELHIPLAKITDVKKPDQIVLDLDPSDDDFEKVRHAALLLKEILDLLQLPAFIK
TTGSRGVHIHIPIKPYYSFLEIKAITKQIAERLHQQSTDTTTLEQRKNKRGNKVFIDYLRNDYGMTAVAPYSLRALENAP
IATPIDWSELQDNALGPRSYHLKNIFRRLAQKQDPWANFVQSSVAIQCRDIGSNIF

Sequences:

>Translated_296_residues
MMIEKVEITHPDKMIFSGAQISKSEVAEYYSRIANFILPWVNERPVTLKCYPNGINKEGFFIKHAPDYFSDSIHRVSIPL
KKTDAHIEMIRIDKAEDLVYLVEQNTIELHIPLAKITDVKKPDQIVLDLDPSDDDFEKVRHAALLLKEILDLLQLPAFIK
TTGSRGVHIHIPIKPYYSFLEIKAITKQIAERLHQQSTDTTTLEQRKNKRGNKVFIDYLRNDYGMTAVAPYSLRALENAP
IATPIDWSELQDNALGPRSYHLKNIFRRLAQKQDPWANFVQSSVAIQCRDIGSNIF
>Mature_296_residues
MMIEKVEITHPDKMIFSGAQISKSEVAEYYSRIANFILPWVNERPVTLKCYPNGINKEGFFIKHAPDYFSDSIHRVSIPL
KKTDAHIEMIRIDKAEDLVYLVEQNTIELHIPLAKITDVKKPDQIVLDLDPSDDDFEKVRHAALLLKEILDLLQLPAFIK
TTGSRGVHIHIPIKPYYSFLEIKAITKQIAERLHQQSTDTTTLEQRKNKRGNKVFIDYLRNDYGMTAVAPYSLRALENAP
IATPIDWSELQDNALGPRSYHLKNIFRRLAQKQDPWANFVQSSVAIQCRDIGSNIF

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 34027; Mature: 34027

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIEKVEITHPDKMIFSGAQISKSEVAEYYSRIANFILPWVNERPVTLKCYPNGINKEGF
CCEEEEECCCCCHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
FIKHAPDYFSDSIHRVSIPLKKTDAHIEMIRIDKAEDLVYLVEQNTIELHIPLAKITDVK
EEEECCCHHCCCCEEEECCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEECHHHHCCCC
KPDQIVLDLDPSDDDFEKVRHAALLLKEILDLLQLPAFIKTTGSRGVHIHIPIKPYYSFL
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEECHHHHHHH
EIKAITKQIAERLHQQSTDTTTLEQRKNKRGNKVFIDYLRNDYGMTAVAPYSLRALENAP
HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEHHCCCCCEEECCHHHHHHCCCC
IATPIDWSELQDNALGPRSYHLKNIFRRLAQKQDPWANFVQSSVAIQCRDIGSNIF
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCC
>Mature Secondary Structure
MMIEKVEITHPDKMIFSGAQISKSEVAEYYSRIANFILPWVNERPVTLKCYPNGINKEGF
CCEEEEECCCCCHHEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCE
FIKHAPDYFSDSIHRVSIPLKKTDAHIEMIRIDKAEDLVYLVEQNTIELHIPLAKITDVK
EEEECCCHHCCCCEEEECCCCCCCCEEEEEEECCCCCEEEEEECCEEEEEECHHHHCCCC
KPDQIVLDLDPSDDDFEKVRHAALLLKEILDLLQLPAFIKTTGSRGVHIHIPIKPYYSFL
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCEEEEEECHHHHHHH
EIKAITKQIAERLHQQSTDTTTLEQRKNKRGNKVFIDYLRNDYGMTAVAPYSLRALENAP
HHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEHHCCCCCEEECCHHHHHHCCCC
IATPIDWSELQDNALGPRSYHLKNIFRRLAQKQDPWANFVQSSVAIQCRDIGSNIF
CCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]