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The map label for this gene is xseB

Identifier: 148359868

GI number: 148359868

Start: 2747116

End: 2747346

Strand: Direct

Name: xseB

Synonym: LPC_1796

Alternate gene names: 148359868

Gene position: 2747116-2747346 (Clockwise)

Preceding gene: 148359867

Following gene: 148359869

Centisome position: 76.81

GC content: 39.83

Gene sequence:

>231_bases
ATGAGCAAAGGCATACATTTCGAACAATCAATCACTGAACTCGAAGAAATTGTCCGGCAACTGGAAAAGGGAGAGCTTAC
CCTTGAAGAATCGCTGAAACAATTTGAAAAGGGAATTAGCCTTGCAAGACGTTGCCAAAATGCTTTGAATCAGGCAGAGC
AAAAAATTGAAACGTTAACTGGTACTGATTCCAACATTGAACTCGACTCAGATGAACAAACAAGTGATTGA

Upstream 100 bases:

>100_bases
ATAAGCTTCTATGATTGATTTTCCACTTACTTCCATTCAGAAGTTGAATCCTCGCGTTAACCCAGTATAATCACACCTTT
TATCGCCTTGGAAAACAGTT

Downstream 100 bases:

>100_bases
TAAGTATACCCAAAGACATGAGCTATATCTCGAGCAATTGCTCAATGAAATAATAATACCAGCTCCAAAAATTCGCTCCG
CACTTCATTACGCTTTATTT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 76; Mature: 75

Protein sequence:

>76_residues
MSKGIHFEQSITELEEIVRQLEKGELTLEESLKQFEKGISLARRCQNALNQAEQKIETLTGTDSNIELDSDEQTSD

Sequences:

>Translated_76_residues
MSKGIHFEQSITELEEIVRQLEKGELTLEESLKQFEKGISLARRCQNALNQAEQKIETLTGTDSNIELDSDEQTSD
>Mature_75_residues
SKGIHFEQSITELEEIVRQLEKGELTLEESLKQFEKGISLARRCQNALNQAEQKIETLTGTDSNIELDSDEQTSD

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=62, Percent_Identity=46.7741935483871, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_LEGPA (Q5X2W0)

Other databases:

- EMBL:   CR628336
- RefSeq:   YP_124588.1
- ProteinModelPortal:   Q5X2W0
- SMR:   Q5X2W0
- STRING:   Q5X2W0
- GeneID:   3116736
- GenomeReviews:   CR628336_GR
- KEGG:   lpp:lpp2277
- LegioList:   lpp2277
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   CEELLRT
- ProtClustDB:   PRK00977
- BioCyc:   LPNE297246:LPP2277-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8626; Mature: 8494

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGIHFEQSITELEEIVRQLEKGELTLEESLKQFEKGISLARRCQNALNQAEQKIETLT
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTDSNIELDSDEQTSD
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKGIHFEQSITELEEIVRQLEKGELTLEESLKQFEKGISLARRCQNALNQAEQKIETLT
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTDSNIELDSDEQTSD
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA