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The map label for this gene is yfcH [H]

Identifier: 148359755

GI number: 148359755

Start: 2615503

End: 2616426

Strand: Reverse

Name: yfcH [H]

Synonym: LPC_1679

Alternate gene names: 148359755

Gene position: 2616426-2615503 (Counterclockwise)

Preceding gene: 148359756

Following gene: 148359752

Centisome position: 73.16

GC content: 40.8

Gene sequence:

>924_bases
GTGAATATCTTATTGGCAGGAGGCTCTGGATTAATAGGACAAGAGTTAGTTCGTGGAATGGGAGAGGAGCACCATTTTAC
TGTGCTGGGGCGTGATAAGGACGCAATACAAAAGATTTTTACAACAAAAATATCCTCTTTGTCCTGGGATGAATTAAATA
CCCAGGATGCCAGTCGGTTTGACGCTGTAATTAATTTATGTGGCGTCAATATTGCCATTTCACGATGGACACCAAAAATA
AAAGAAGAAATAATCAGTTCGAGAGTGCAAACAACAGAAAATTTGCTTCATTGGATTTTGCAGCAGAATGCCAAACCTCG
CTTTTATTGCGCCAATGCAGTTGGGATTTATGGTTTACAGGAAAATGGTGACGCAACTGATTTGACTGAAGATACAGCAA
TTCATTGGGAACACCCAAAGGATTACCTAAGTGAAGTGGGAATTCGTTGGCAGCAAGCCTTGCAAAAGGCAGAGGAAGCG
GGCCTTCCTGTGACTTCCACACGCTTTGGCGTTGTTCTAAAAAAGGGAAAGGGTTTTTTAGGAAAGCTCTATCCCAGTTT
TATTTGCGGATTAGGAAGTACTATTGGAGATGGTCGCCAATATCTTTCCTGGATAGACAGTGAGGATTTGGTCAATGCCT
ATCGGTTTTTGTTAAATCATTCTGAAATTACCGGACCTGTGAATGTGACCTCACCAAATCCATGCATGCAAAGAGAATTT
GCTAAAGCTTTTGCCAAGTCTCTGCATAGGCCACTATTATTGTGGACTCCTGCTTTTATAATTCATCTTTTATTTGGTGA
AATGGGTGATTGTTTAATCAATCACGGGCAAAAGGTAAAACCCAAACGACTTTTGGAAGCTGGTTTTGAGTTTAAATGGC
CTGACATTGAAAAGGCACTAAAGCACCAGTATTCTGCTATATAG

Upstream 100 bases:

>100_bases
ACAAATCCCTAAACTCTATTGAGGCACGGTACTAATGACAAACAGTACTCATCAGTTTATATTAATCAAATAAGATGGCC
TGAAAGGAGCTTGATTCATT

Downstream 100 bases:

>100_bases
TAACAGCATTTTTAAGAGGATTTCATGATTTGGAGGGATATTTAAAATACCCTGTAAGTTACTGAATACTTGACAGGGTA
TTTAAAGGAGTACTAATTAA

Product: nucleoside-diphosphate sugar epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MNILLAGGSGLIGQELVRGMGEEHHFTVLGRDKDAIQKIFTTKISSLSWDELNTQDASRFDAVINLCGVNIAISRWTPKI
KEEIISSRVQTTENLLHWILQQNAKPRFYCANAVGIYGLQENGDATDLTEDTAIHWEHPKDYLSEVGIRWQQALQKAEEA
GLPVTSTRFGVVLKKGKGFLGKLYPSFICGLGSTIGDGRQYLSWIDSEDLVNAYRFLLNHSEITGPVNVTSPNPCMQREF
AKAFAKSLHRPLLLWTPAFIIHLLFGEMGDCLINHGQKVKPKRLLEAGFEFKWPDIEKALKHQYSAI

Sequences:

>Translated_307_residues
MNILLAGGSGLIGQELVRGMGEEHHFTVLGRDKDAIQKIFTTKISSLSWDELNTQDASRFDAVINLCGVNIAISRWTPKI
KEEIISSRVQTTENLLHWILQQNAKPRFYCANAVGIYGLQENGDATDLTEDTAIHWEHPKDYLSEVGIRWQQALQKAEEA
GLPVTSTRFGVVLKKGKGFLGKLYPSFICGLGSTIGDGRQYLSWIDSEDLVNAYRFLLNHSEITGPVNVTSPNPCMQREF
AKAFAKSLHRPLLLWTPAFIIHLLFGEMGDCLINHGQKVKPKRLLEAGFEFKWPDIEKALKHQYSAI
>Mature_307_residues
MNILLAGGSGLIGQELVRGMGEEHHFTVLGRDKDAIQKIFTTKISSLSWDELNTQDASRFDAVINLCGVNIAISRWTPKI
KEEIISSRVQTTENLLHWILQQNAKPRFYCANAVGIYGLQENGDATDLTEDTAIHWEHPKDYLSEVGIRWQQALQKAEEA
GLPVTSTRFGVVLKKGKGFLGKLYPSFICGLGSTIGDGRQYLSWIDSEDLVNAYRFLLNHSEITGPVNVTSPNPCMQREF
AKAFAKSLHRPLLLWTPAFIIHLLFGEMGDCLINHGQKVKPKRLLEAGFEFKWPDIEKALKHQYSAI

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=308, Percent_Identity=29.8701298701299, Blast_Score=133, Evalue=2e-31,
Organism=Escherichia coli, GI1788642, Length=304, Percent_Identity=38.8157894736842, Blast_Score=187, Evalue=7e-49,
Organism=Drosophila melanogaster, GI28573846, Length=300, Percent_Identity=29.6666666666667, Blast_Score=144, Evalue=8e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 34465; Mature: 34465

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLAGGSGLIGQELVRGMGEEHHFTVLGRDKDAIQKIFTTKISSLSWDELNTQDASRF
CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCHHCCCCHHHHH
DAVINLCGVNIAISRWTPKIKEEIISSRVQTTENLLHWILQQNAKPRFYCANAVGIYGLQ
HHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEC
ENGDATDLTEDTAIHWEHPKDYLSEVGIRWQQALQKAEEAGLPVTSTRFGVVLKKGKGFL
CCCCCCCCCCCCEEECCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCHH
GKLYPSFICGLGSTIGDGRQYLSWIDSEDLVNAYRFLLNHSEITGPVNVTSPNPCMQREF
HHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHH
AKAFAKSLHRPLLLWTPAFIIHLLFGEMGDCLINHGQKVKPKRLLEAGFEFKWPDIEKAL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHH
KHQYSAI
HHHHCCC
>Mature Secondary Structure
MNILLAGGSGLIGQELVRGMGEEHHFTVLGRDKDAIQKIFTTKISSLSWDELNTQDASRF
CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCHHCCCCHHHHH
DAVINLCGVNIAISRWTPKIKEEIISSRVQTTENLLHWILQQNAKPRFYCANAVGIYGLQ
HHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEC
ENGDATDLTEDTAIHWEHPKDYLSEVGIRWQQALQKAEEAGLPVTSTRFGVVLKKGKGFL
CCCCCCCCCCCCEEECCCCHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCHH
GKLYPSFICGLGSTIGDGRQYLSWIDSEDLVNAYRFLLNHSEITGPVNVTSPNPCMQREF
HHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHH
AKAFAKSLHRPLLLWTPAFIIHLLFGEMGDCLINHGQKVKPKRLLEAGFEFKWPDIEKAL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHH
KHQYSAI
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]