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The map label for this gene is yggS [C]

Identifier: 148359586

GI number: 148359586

Start: 2369159

End: 2369854

Strand: Direct

Name: yggS [C]

Synonym: LPC_1498

Alternate gene names: 148359586

Gene position: 2369159-2369854 (Clockwise)

Preceding gene: 148359584

Following gene: 148359587

Centisome position: 66.24

GC content: 38.07

Gene sequence:

>696_bases
ATGAGTATTAGTCAGAACATAAAAAAAGTAAGAGAACTGTTAACCCAGACAGAATTATCCAGTAACAGGCAACCGAACAG
TGTCTTACTATTGGCTGTTAGCAAAGAACAAAGCCCCGAATTAATCAGAGAGGCCTTCGAACAAGGAATAAGACACTTTG
GAGAAAACTATTTTCAGGAAGCCCAGGAAAAAATATTGGCATTAAAAGATCTGCCTATCTGTTGGCATTTTATAGGGCCT
ATTCAAAGTAATAAAACCAAAGGAATAGCGAAATATTTTAATTGGGTCCACAGCATTGACCGAAATAAAACAGCGAAACT
TCTTAACCAGTTCAGATCTGAGCAACTACCACCGCTCAATGTCTGTTTACAAATTAATTTGGCTGGAGAAACCACAAAAT
CAGGCATTCCTCCAGAACATGCCATCGACCTTGCTCTCGAAGTAAAGCAATTGCCTAATTTGCAACTAAGGGGACTGATG
ACAATCCCTCCTCAGCAAAACAACATGCAAACACAGTACGATTTATTCCTTAAACTCAATCAACTCAAGGAATCCATCAA
TAAGACACTTCATTTAAAAATGGATACTTTATCAATGGGTATGAGTGATGATTTGGTTCCGGCAATTAAAGCAGGTTCGA
CCATAGTTCGAATTGGACGAGCAATTTTTGGCGAACGAAAAGGTAAATTATTATGA

Upstream 100 bases:

>100_bases
GCAATCATGGATATCTTTTTGTAGTACCATTACACTTCATGCATAATTAATACTTCTTTTTATAATAATGCGCCTCATCT
TTTGATTAACCAGGATTAAT

Downstream 100 bases:

>100_bases
ATATCAGTTTTATTGGTTATGGGAATATGGCGAAAGCAATTGTCTGCCACTTACAAAAGCAAAACAAATACTCATTGTCA
GCTGCCTCACCATCCTTATC

Product: pyridoxal-5'-phosphate dependent enzyme family transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQEAQEKILALKDLPICWHFIGP
IQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLNVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLM
TIPPQQNNMQTQYDLFLKLNQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL

Sequences:

>Translated_231_residues
MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQEAQEKILALKDLPICWHFIGP
IQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLNVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLM
TIPPQQNNMQTQYDLFLKLNQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL
>Mature_230_residues
SISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQEAQEKILALKDLPICWHFIGPI
QSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLNVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMT
IPPQQNNMQTQYDLFLKLNQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=210, Percent_Identity=39.5238095238095, Blast_Score=118, Evalue=5e-27,
Organism=Escherichia coli, GI1789321, Length=227, Percent_Identity=44.9339207048458, Blast_Score=199, Evalue=9e-53,
Organism=Caenorhabditis elegans, GI17533025, Length=225, Percent_Identity=38.6666666666667, Blast_Score=130, Evalue=7e-31,
Organism=Saccharomyces cerevisiae, GI6319435, Length=231, Percent_Identity=38.5281385281385, Blast_Score=113, Evalue=3e-26,
Organism=Drosophila melanogaster, GI45550861, Length=241, Percent_Identity=40.2489626556017, Blast_Score=126, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26180; Mature: 26049

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE
CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AQEKILALKDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLN
HHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
VCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKLN
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHHHHHHH
QLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL
HHHHHHHHHEEEEEHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE
CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
AQEKILALKDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPLN
HHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEE
VCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKLN
EEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHHHHHHH
QLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGERKGKLL
HHHHHHHHHEEEEEHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]