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The map label for this gene is ydgR [H]

Identifier: 148359067

GI number: 148359067

Start: 1764377

End: 1765903

Strand: Reverse

Name: ydgR [H]

Synonym: LPC_0954

Alternate gene names: 148359067

Gene position: 1765903-1764377 (Counterclockwise)

Preceding gene: 148359068

Following gene: 148359066

Centisome position: 49.38

GC content: 36.94

Gene sequence:

>1527_bases
ATGTTGATTTTGAGTAAAAGAAGAGGACTATGGAGTTCCATGCCCCAAGGTACATTTGCATTATTTTTTATACAAGTCGT
TTCTACTTTAAGCTTTAGTGTTCTTTATTCAACTCTTGTATTGTACATGAAAGGTAAACTTGGTTTACCCATAGCCACAG
CAAACAGCATCATGGGGGTATTTATAGCCTACAATTTTGCGCTGCATCTGTTAGGTGGTTTTTGGGGTGGCAGACTGCTC
TCTAACCGCTCCTTATTTTGTGTTGGGATGATCGCGCAAATTGTAGGATGTGTTTTGCTCTCTATAGGAAATACAACTTT
TTTATATTATGGCTTGGCTGCATTCTTAACAGGTTCAGGGTTAAATGTAACATGTGTAAATTGTATGCTGACTCAGCAAT
TTGCACCTGAAGACTCTCGAAGAGAAACCGCATTTCTCTGGAATTATGCGGGAATGAATATTGGCTTTTTTATTGGATTT
AGCCTCAGTGGGGCGTTCCAAATTTCTCAAAACTATCAAAGGCTTTTTCTTTTAAGCAGTTTAGGTAATCTTGTTGCTTT
GCTTATATGCCTTTATTTCTGGCAACAATTACATGATAAAAACACTACTTACTCAAGAAAGGACAAACCTGCACAAAGAA
AAGCAACAGCATTGGGGATTGGGCTAATTTTTGTACTTCCATTTATTTTAAGACAATTATTGCAGTATGCTGATTGGGCC
AATAAATTGGTTATTGTCACTGGAATTGTTATGCTCATATTAATCTTGATATTAGCCCAGCAACAATCTACAAAAGAAGC
AAGAGACAAGATTTATGGATTTGCAGTATTAATGTTGGTTGGTACTGTATTTTGGATGTTATACCAAATTGGCCCAATGG
GATTAACCGTATTCATTGATCATAATGTGCAACGACAATATGGTAATTGGATTATTCCGCCACAGTGGTTTCAAAATATC
AATACTGTAGTCATAGTATTTGGAGGGCCACTATTGGGTTTCATCTTAAATAGAATGCGTCAAAATGGATCTCAGATAAA
TATCCCTACTCAATTTGCTTTCGCATTATTTTTTATAGGGGTTGCTTTTGCTATCTTACCAATAGGTATCAATTACGCTA
ATCAGCATGGTATGGTTAATCCGGGTTGGGTAGTAATAAGCTTTATATTACAAAGTATTGGCGAACTTCTAATATCTCCA
ATTGGCTATGCGATGATAGGAGCGTTGGCCCCAACTTCACTCCAGGGTGTCATGATGGGAATGTGGATGCTGAATACTGG
AGTTGGTGCCACTCTATCCAGTTATAGCTCAAACTTAATGATTATTGGTCAAGAAAGTACTTCTCCTTTATTAACCAATG
AGGGTTACAGTCATGTCTTTTTGATGCTTGGTTTGTTTGCAATAGGATCATCCGTTATCCTTTTCATTTTAGTGCCTAAA
CTAAGAAAGCTGATCAAAGAAAAAAACTTGAATGGCTTTAAACAGTCTGGCTTAGAGGTAACTGAAAGAGTAGCTTTATG
TGAGTAG

Upstream 100 bases:

>100_bases
ACTTTTTCACTTGCTGACGAAAGGTGGTTTTTCTCTGATTTGTCCACAAGGGTTAGTGTTAATATTCAAGAAGAGCTCAA
CTAGCAAGGGAAAGCATATA

Downstream 100 bases:

>100_bases
TCCCTTTGCCCCAATTATAACGGCAGATATTGATTGGCGTGATGATCTGCCGTATTCCTTACAATTTGATGATATTTACT
ATTCTGCTGAAGGTGGAATT

Product: POT family transporter peptide transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLPIATANSIMGVFIAYNFALHLLGGFWGGRLL
SNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCMLTQQFAPEDSRRETAFLWNYAGMNIGFFIGF
SLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKPAQRKATALGIGLIFVLPFILRQLLQYADWA
NKLVIVTGIVMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQIGPMGLTVFIDHNVQRQYGNWIIPPQWFQNI
NTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGINYANQHGMVNPGWVVISFILQSIGELLISP
IGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPLLTNEGYSHVFLMLGLFAIGSSVILFILVPK
LRKLIKEKNLNGFKQSGLEVTERVALCE

Sequences:

>Translated_508_residues
MLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLPIATANSIMGVFIAYNFALHLLGGFWGGRLL
SNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCMLTQQFAPEDSRRETAFLWNYAGMNIGFFIGF
SLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKPAQRKATALGIGLIFVLPFILRQLLQYADWA
NKLVIVTGIVMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQIGPMGLTVFIDHNVQRQYGNWIIPPQWFQNI
NTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGINYANQHGMVNPGWVVISFILQSIGELLISP
IGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPLLTNEGYSHVFLMLGLFAIGSSVILFILVPK
LRKLIKEKNLNGFKQSGLEVTERVALCE
>Mature_508_residues
MLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLPIATANSIMGVFIAYNFALHLLGGFWGGRLL
SNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSGLNVTCVNCMLTQQFAPEDSRRETAFLWNYAGMNIGFFIGF
SLSGAFQISQNYQRLFLLSSLGNLVALLICLYFWQQLHDKNTTYSRKDKPAQRKATALGIGLIFVLPFILRQLLQYADWA
NKLVIVTGIVMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQIGPMGLTVFIDHNVQRQYGNWIIPPQWFQNI
NTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIGVAFAILPIGINYANQHGMVNPGWVVISFILQSIGELLISP
IGYAMIGALAPTSLQGVMMGMWMLNTGVGATLSSYSSNLMIIGQESTSPLLTNEGYSHVFLMLGLFAIGSSVILFILVPK
LRKLIKEKNLNGFKQSGLEVTERVALCE

Specific function: Proton-dependent permease that transports di- and tripeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787922, Length=477, Percent_Identity=28.0922431865828, Blast_Score=177, Evalue=2e-45,
Organism=Escherichia coli, GI1789911, Length=478, Percent_Identity=26.9874476987448, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI1790572, Length=494, Percent_Identity=27.1255060728745, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1786927, Length=425, Percent_Identity=23.7647058823529, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 56231; Mature: 56231

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS00589 PTS_HPR_SER ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLPIATANSIMGV
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHH
FIAYNFALHLLGGFWGGRLLSNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSG
HHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
LNVTCVNCMLTQQFAPEDSRRETAFLWNYAGMNIGFFIGFSLSGAFQISQNYQRLFLLSS
CCEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCEEEEHHHHHHHHHHHH
LGNLVALLICLYFWQQLHDKNTTYSRKDKPAQRKATALGIGLIFVLPFILRQLLQYADWA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKLVIVTGIVMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQIGPMGLTVFID
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
HNVQRQYGNWIIPPQWFQNINTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIG
CCCHHHCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCEECCCHHHHHHHHHHH
VAFAILPIGINYANQHGMVNPGWVVISFILQSIGELLISPIGYAMIGALAPTSLQGVMMG
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
MWMLNTGVGATLSSYSSNLMIIGQESTSPLLTNEGYSHVFLMLGLFAIGSSVILFILVPK
HHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRKLIKEKNLNGFKQSGLEVTERVALCE
HHHHHHHCCCCCHHHCCHHHHHHHHCCC
>Mature Secondary Structure
MLILSKRRGLWSSMPQGTFALFFIQVVSTLSFSVLYSTLVLYMKGKLGLPIATANSIMGV
CEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHH
FIAYNFALHLLGGFWGGRLLSNRSLFCVGMIAQIVGCVLLSIGNTTFLYYGLAAFLTGSG
HHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
LNVTCVNCMLTQQFAPEDSRRETAFLWNYAGMNIGFFIGFSLSGAFQISQNYQRLFLLSS
CCEEEHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECCCEEEEHHHHHHHHHHHH
LGNLVALLICLYFWQQLHDKNTTYSRKDKPAQRKATALGIGLIFVLPFILRQLLQYADWA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKLVIVTGIVMLILILILAQQQSTKEARDKIYGFAVLMLVGTVFWMLYQIGPMGLTVFID
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
HNVQRQYGNWIIPPQWFQNINTVVIVFGGPLLGFILNRMRQNGSQINIPTQFAFALFFIG
CCCHHHCCCCCCCHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCEECCCHHHHHHHHHHH
VAFAILPIGINYANQHGMVNPGWVVISFILQSIGELLISPIGYAMIGALAPTSLQGVMMG
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
MWMLNTGVGATLSSYSSNLMIIGQESTSPLLTNEGYSHVFLMLGLFAIGSSVILFILVPK
HHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRKLIKEKNLNGFKQSGLEVTERVALCE
HHHHHHHCCCCCHHHCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]