| Definition | Legionella pneumophila str. Corby chromosome, complete genome. |
|---|---|
| Accession | NC_009494 |
| Length | 3,576,470 |
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The map label for this gene is lssE [H]
Identifier: 148359051
GI number: 148359051
Start: 1745736
End: 1748258
Strand: Direct
Name: lssE [H]
Synonym: LPC_0937
Alternate gene names: 148359051
Gene position: 1745736-1748258 (Clockwise)
Preceding gene: 148359050
Following gene: 148359055
Centisome position: 48.81
GC content: 33.17
Gene sequence:
>2523_bases ATGCCATCAATGGTACTCCCTAAATCATCTAATGCTTACCCCTTCGCATATTATTTAACCATCACCTTTGCCATGCTAAC ACTAATTTTGGGGTTGTCTGTCTTAATTGGTTGGCATTTTGGTATTGAGTTTTTAATTCAATACCAATCAGGTTCAGTAG CAATTGTTTATAATACTGCTCTATGCTTTATTGTTTTGTCCCTTGCTATTCTATTTTCTCTAAATTGCTATTATAAGTCG TCTTTAATTTTAGGTATTACTGTTTTCGTTTTTTCTGGTTTGGGTTTTTCCCAGCATATTTTAGATGTTAACCTTGGGAT TGATGAAATTTTTTTCCATCACTATCATGCCTTTAAAAATGCTTATCCAGGCCGGATGGCAGCAAACACCGCTTTTTGCT TTTTAATGATATCGGCTGCTCTTATTATGATGAATTTAAAATGCTATAGGTCATTTAATAATTCATTAGCTGGTGCACTT GGGTTTCTAGTATTTTGTTTGGCAATTTTATTCATAAGTGGATATTTCTCAGAAATTCAACACGCTTACCAATGGGGAGT TAAAACCCCCATGTCAATTAATACGGCAATTGATTTTTTTATGTTGTCCTCGGCAACAATAGGACTATATTGGAGGAACA GTATCTATTTTCAATTGAATTCCAGTATTGCGATGCCTTATTTATGCTCGTTTTGTATTATGCTAACTTTTACATTACTA TCATTCGAAATTTTAGAAAAGGAAAATAGGTTAAACTTAAGTTTTTCAATCGCAACATTTGTTATTGGCATTTTTCTTTC TTTCCTTTTTGGATTGGTTATCAGATTGTGGCAACTGGCAAAACTATCAGCTATAGCGGCTAAATACGCATTTTTAGAAG TCGAGGCTACCCTGGAATCAACAGCTGATGCTATTTTGGTAGTGGATAAAGAAGGCAATGTGATTAATTACAATCAACGT TTTTTAGACATGTGGCGCCAGAGAATAAATCCGCCACGTATAATAAACTATCTGGATATAAAAGAAGAGATTAATAAACA ATTAGTGAATAAAAGGGAAGTAATCCACAGAATTAATCAAACTATTAAACATCCTGATCATCAAAATTCATTCGAATTAC GACTTAAAGGCAATCTTTATTATGATTGCTACACCCAACCACTAAAATTGGATGAAGATATTATTGGTCGCGTTTGGAGT TTTAGAGATATTACTATTCCTAAAAGACTTGAAATGGAATTATCCCATCAATCTACACATGATACACTCACCAACTTGCC TAATAAAGTGTTGGCTATCGACATGCTGAGATATGCAATGAAAGGTGCAATTAGCGATAAAAAAATTGTTGGGGTGTATT TACTGGATTTAGATCGATTTACGCAAATTAACGATGTATTTGGTCATAGCAAGGGAGATGAAATAATTAAAATTATTGCC AAACGATTAAAAGATTGTGTGCCAGTTGAGCATATCCTTGGGCGAATTAGTGGCGATCAATTTATTGTAATTGCGAGTCT TGATGAAATTAGAGAAGCTGTTTTAGGGGTTACACGGTTATTAGCTGCCTTTCATGAGCCTGTAATAATGAATAGCCATT GTATCAAAATGAGTTGCAGCATAGGTGTTTCCTTCTATCCAAGAGATGGCAATACAGTTGACGTGTTGTTATCCAAAGCT GATATTGCTTTGTCTCGAACAAAAATCGAAGGCCGTAATAACTTTCAATTTTATACCAGAGACATGAATACCTATACTTT AGAACATATTCTATTAGAAAATGAATTAAGGAATGCTATTAGAAAAAGAGAATTTGTTTTGTATTATCAACCTATTCTGG AGTTAAGATCTTTGAATTTAAATGGCTTTGAAGCATTAATCCGCTGGAATCATCCCAGAAATGGATTGCTTCTCCCTGAG AAATTTATCCAGCTGGCGGAAGAAATAGGAATAATTAGTGAGATTGGTGATTGGGTACTTACAACTGTTTGTAAGCAGAT AAAGACATGGCAAAAACAGGGAGTTAATAATTTAAAGGTTGCTGTCAATATTTCGCCAAAACATTTAAAGTTTCGACATC TTCCAATACGAATTAACGAAATATTATCCGAGTTTCAGGTGAAATCAGAATCTATTGAATTAGAGTTAACAGAAAATATT TTGATAGACAAGTCGAGTGGTATTATTGATACTTTAAATGAGTTAAAAGAAATAGGCATTAAAATATCAATTGATGATTT TGGCACTGGGTATTCTTGTCTAAGTTATTTAAAAGAATTACCAATTGATATAATAAAAATTGATAAAGAATTTATCAAAG ATCTTATCACGAACCAACCGAACCAAGCCTTGGTAAAAGCAATAATTGCAATGGCGAAAAATCTTGGGTTGCATTTGATT GCTGAGGGAATTGAAAACAAATATCAACTTGAAATTTTACAAAACTTGGGTTGTCATTATGGTCAAGGATACTATTTTTA TCATCCCATGCCACCTGATAAATGTATGCAATTTTTACAATAA
Upstream 100 bases:
>100_bases AGAACGTTGATGAAGTTGTTACGGTATTATGAAAAAATGGTCTATCATTATAATATTAGTCTTATTTTTGCAAGGATATC ATTGCTAGGGATATAACATT
Downstream 100 bases:
>100_bases TTTATTTATTTGCCTCATGATCCGGATGAACGATAAAAATCCCTGGCGCATTACGTAAGTACTCGTGATAATCCATACCA TAGCCAAAAATATAATGATC
Product: GGDEF/EAL domain-containing sensory box protein
Products: NA
Alternate protein names: Bacteriophytochrome cph2 [H]
Number of amino acids: Translated: 840; Mature: 839
Protein sequence:
>840_residues MPSMVLPKSSNAYPFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQYQSGSVAIVYNTALCFIVLSLAILFSLNCYYKS SLILGITVFVFSGLGFSQHILDVNLGIDEIFFHHYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGAL GFLVFCLAILFISGYFSEIQHAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCSFCIMLTFTLL SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLESTADAILVVDKEGNVINYNQR FLDMWRQRINPPRIINYLDIKEEINKQLVNKREVIHRINQTIKHPDHQNSFELRLKGNLYYDCYTQPLKLDEDIIGRVWS FRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLRYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVLGVTRLLAAFHEPVIMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKA DIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRNAIRKREFVLYYQPILELRSLNLNGFEALIRWNHPRNGLLLPE KFIQLAEEIGIISEIGDWVLTTVCKQIKTWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLI AEGIENKYQLEILQNLGCHYGQGYYFYHPMPPDKCMQFLQ
Sequences:
>Translated_840_residues MPSMVLPKSSNAYPFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQYQSGSVAIVYNTALCFIVLSLAILFSLNCYYKS SLILGITVFVFSGLGFSQHILDVNLGIDEIFFHHYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGAL GFLVFCLAILFISGYFSEIQHAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCSFCIMLTFTLL SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLESTADAILVVDKEGNVINYNQR FLDMWRQRINPPRIINYLDIKEEINKQLVNKREVIHRINQTIKHPDHQNSFELRLKGNLYYDCYTQPLKLDEDIIGRVWS FRDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLRYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVLGVTRLLAAFHEPVIMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKA DIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRNAIRKREFVLYYQPILELRSLNLNGFEALIRWNHPRNGLLLPE KFIQLAEEIGIISEIGDWVLTTVCKQIKTWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLI AEGIENKYQLEILQNLGCHYGQGYYFYHPMPPDKCMQFLQ >Mature_839_residues PSMVLPKSSNAYPFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQYQSGSVAIVYNTALCFIVLSLAILFSLNCYYKSS LILGITVFVFSGLGFSQHILDVNLGIDEIFFHHYHAFKNAYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALG FLVFCLAILFISGYFSEIQHAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCSFCIMLTFTLLS FEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLESTADAILVVDKEGNVINYNQRF LDMWRQRINPPRIINYLDIKEEINKQLVNKREVIHRINQTIKHPDHQNSFELRLKGNLYYDCYTQPLKLDEDIIGRVWSF RDITIPKRLEMELSHQSTHDTLTNLPNKVLAIDMLRYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIAK RLKDCVPVEHILGRISGDQFIVIASLDEIREAVLGVTRLLAAFHEPVIMNSHCIKMSCSIGVSFYPRDGNTVDVLLSKAD IALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRNAIRKREFVLYYQPILELRSLNLNGFEALIRWNHPRNGLLLPEK FIQLAEEIGIISEIGDWVLTTVCKQIKTWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENIL IDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQPNQALVKAIIAMAKNLGLHLIA EGIENKYQLEILQNLGCHYGQGYYFYHPMPPDKCMQFLQ
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 GGDEF domains [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=34.7319347319347, Blast_Score=285, Evalue=8e-78, Organism=Escherichia coli, GI87081921, Length=430, Percent_Identity=31.3953488372093, Blast_Score=244, Evalue=1e-65, Organism=Escherichia coli, GI226510982, Length=413, Percent_Identity=28.5714285714286, Blast_Score=194, Evalue=2e-50, Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=35.2, Blast_Score=166, Evalue=5e-42, Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=34.6774193548387, Blast_Score=151, Evalue=1e-37, Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=30.8943089430894, Blast_Score=148, Evalue=1e-36, Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=34.4398340248963, Blast_Score=148, Evalue=2e-36, Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=32.520325203252, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI87081980, Length=241, Percent_Identity=34.0248962655602, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=31.0483870967742, Blast_Score=130, Evalue=5e-31, Organism=Escherichia coli, GI1788849, Length=305, Percent_Identity=28.1967213114754, Blast_Score=128, Evalue=1e-30, Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=28.2352941176471, Blast_Score=128, Evalue=2e-30, Organism=Escherichia coli, GI1788381, Length=202, Percent_Identity=27.2277227722772, Blast_Score=87, Evalue=5e-18, Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=31.3953488372093, Blast_Score=86, Evalue=9e-18, Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=35.1190476190476, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1786584, Length=159, Percent_Identity=27.6729559748428, Blast_Score=73, Evalue=6e-14, Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=27.9329608938547, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1787056, Length=236, Percent_Identity=27.1186440677966, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=28, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787816, Length=168, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR003018 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 [H]
Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]
EC number: NA
Molecular weight: Translated: 96122; Mature: 95991
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSMVLPKSSNAYPFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQYQSGSVAIVYNTA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEHHH LCFIVLSLAILFSLNCYYKSSLILGITVFVFSGLGFSQHILDVNLGIDEIFFHHYHAFKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHC AYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAILFISGYFSEIQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH HAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCSFCIMLTFTLL HHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECEEEEEECCCCCHHHHHHHHHHHHHHHH SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLES HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHC TADAILVVDKEGNVINYNQRFLDMWRQRINPPRIINYLDIKEEINKQLVNKREVIHRINQ CCCEEEEEECCCCEEECHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH TIKHPDHQNSFELRLKGNLYYDCYTQPLKLDEDIIGRVWSFRDITIPKRLEMELSHQSTH HHCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHH DTLTNLPNKVLAIDMLRYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA HHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHH KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVLGVTRLLAAFHEPVIMNSHCIKMSCS HHHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEE IGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRNAI CCEEEECCCCCEEEEEEEHHHHEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHH RKREFVLYYQPILELRSLNLNGFEALIRWNHPRNGLLLPEKFIQLAEEIGIISEIGDWVL HHHHEEEEHHHHHHHHHCCCCCEEEHEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH TTVCKQIKTWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI HHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCEEHHHHHHHHHHCCCCEEEEEECCE LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQP EEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCHHEEECCHHHHHHHHCCCC NQALVKAIIAMAKNLGLHLIAEGIENKYQLEILQNLGCHYGQGYYFYHPMPPDKCMQFLQ HHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCC >Mature Secondary Structure PSMVLPKSSNAYPFAYYLTITFAMLTLILGLSVLIGWHFGIEFLIQYQSGSVAIVYNTA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEHHH LCFIVLSLAILFSLNCYYKSSLILGITVFVFSGLGFSQHILDVNLGIDEIFFHHYHAFKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHC AYPGRMAANTAFCFLMISAALIMMNLKCYRSFNNSLAGALGFLVFCLAILFISGYFSEIQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH HAYQWGVKTPMSINTAIDFFMLSSATIGLYWRNSIYFQLNSSIAMPYLCSFCIMLTFTLL HHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEECEEEEEECCCCCHHHHHHHHHHHHHHHH SFEILEKENRLNLSFSIATFVIGIFLSFLFGLVIRLWQLAKLSAIAAKYAFLEVEATLES HHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHC TADAILVVDKEGNVINYNQRFLDMWRQRINPPRIINYLDIKEEINKQLVNKREVIHRINQ CCCEEEEEECCCCEEECHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH TIKHPDHQNSFELRLKGNLYYDCYTQPLKLDEDIIGRVWSFRDITIPKRLEMELSHQSTH HHCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHH DTLTNLPNKVLAIDMLRYAMKGAISDKKIVGVYLLDLDRFTQINDVFGHSKGDEIIKIIA HHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHH KRLKDCVPVEHILGRISGDQFIVIASLDEIREAVLGVTRLLAAFHEPVIMNSHCIKMSCS HHHHHCCCHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEE IGVSFYPRDGNTVDVLLSKADIALSRTKIEGRNNFQFYTRDMNTYTLEHILLENELRNAI CCEEEECCCCCEEEEEEEHHHHEEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHH RKREFVLYYQPILELRSLNLNGFEALIRWNHPRNGLLLPEKFIQLAEEIGIISEIGDWVL HHHHEEEEHHHHHHHHHCCCCCEEEHEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHHH TTVCKQIKTWQKQGVNNLKVAVNISPKHLKFRHLPIRINEILSEFQVKSESIELELTENI HHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCEEHHHHHHHHHHCCCCEEEEEECCE LIDKSSGIIDTLNELKEIGIKISIDDFGTGYSCLSYLKELPIDIIKIDKEFIKDLITNQP EEECCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCHHEEECCHHHHHHHHCCCC NQALVKAIIAMAKNLGLHLIAEGIENKYQLEILQNLGCHYGQGYYFYHPMPPDKCMQFLQ HHHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 10978170; 11063585 [H]