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The map label for this gene is recJ [H]

Identifier: 148358991

GI number: 148358991

Start: 1676385

End: 1677935

Strand: Direct

Name: recJ [H]

Synonym: LPC_0876

Alternate gene names: 148358991

Gene position: 1676385-1677935 (Clockwise)

Preceding gene: 148358990

Following gene: 148358992

Centisome position: 46.87

GC content: 41.26

Gene sequence:

>1551_bases
TTGCGTTCAGAGCAACGTATTCTTATTATCGGTGATTTTGATGCCGATGGGGCAACTTCTACGGCATTAGCCATTACTGC
CTTGCGTGCTATGGGTGCAAGGTTTGTTGAGTACTTGGTACCTAATCGATTTGAATTTGGTTATGGTCTTACTCCTGCTA
TTGTTGAAGTGGCAAGCAAATGGCAACCTCATTTAATTATCACTGTTGATAATGGTATAGCCAGTTTTGAAGGAGTAGAT
GCGGCTAATAAAATGGGAATAGATGTATTAATTACTGATCATCATTTGCCAGCAGAATCACTACCTGATGCTTGTGCAAT
TGTTAATCCCAATCAGCCTGGTTGTTTATTTCCAAGCAAGTCAATTGCGGGAGTTGGCGTTATTTTTTACGTTATGCTGG
CATTGCGCAGGCATCTTTCCAATTGTAACTGGTTTAATGAAATCAACATGCCTGAGCCTAATATGGCGAGTTTTCTGGAT
TTGGTTGCATTAGGGACTGTAGCCGACGTTGTGGGGCTTGACCAAAATAACAGGATCATGGTTAATCAAGGCATGATGCG
TATTCGTCAAGGACAATGCAGAGAGGGAATAAAAGCCTTGATTGAAATTGCTGGTAGGGATTGTTCCAGGCTAAGAGAGT
CTGACCTTGGTTTTGCCATAGCACCAAGATTAAATGCCGCAGGTCGTCTGGATGATATGTCGCTTGGTATTGAATGTTTG
ATTACGACGGATCCAAAAATGGCAAGAAATTTCTGTCAACAGTTGGATGAGTTGAATCTGGAAAGAAGACAAATAGAATC
TGAAATGAAAGAGCAAGCCATGCTTGCTTTGGAGAAATTGTCAATTAATGATGAAAAGAATAAACACTTACCGGTTGCCT
TGTGCCTTCATGATAAAACCTGGCATCAAGGAGTGATAGGAATCTTGGCAGGAAGGATGAAGGAGAAATATCATCGACCT
GTCATTGCATTTGCTTCTGTCAGTGAGCATGAGTTAAAGGGCTCAGCACGTTCTGTCCCCGATTTAAACATTAGAGATGT
GCTGGCAGCTGTTGATAAAGACAATCCAGGACTAATTCTTAAATTCGGAGGACATGCTATGGCTGCCGGTTTAAGTATTA
GCCCCGAATTATTGAATGATTTTCGCTCAGCTTTCGTGTCAGAGGTTCTGAAACATCTTGACTTATCACAGTGCGAGGGA
GAAATACTGACGGACGGACCATTGCAATCCCATGAACTGAATTTAGAAACAGCACAATTAATACAACAAGCCGGTCCTTG
GGGCCAAGCGTTTGCAGAACCCGTATTTGATAATGTATTTGAAATTCTGGATCAACGAATTGTCGGTAAAAATCATTTAA
AAATGACATTAATTTCCTCACAAGGAGGGGAGCAACTGGATGCCATTGCTTTTAATGTGGATTTAAAATCCTGGCCTAAT
CATAGGATTAAGTACGTTCATGCCGCCTATAAACTGGATATCAATTTTTATCAGGGGAGAACAAGGCTCCAATTGCTTAT
CCAGGCAATGAATCCTGTTCAGCAAGCATAA

Upstream 100 bases:

>100_bases
CATTAGTGACGAATCTCAACTTGATAAACAATTACAAACATTACTTCCTTTTCACACTTTAAAAGGCATTAATGAAGCTT
GTCTAAGATTAGAGAATGCT

Downstream 100 bases:

>100_bases
ACTCTTAAATTGATGCTATTTTTGTGTATTTCTCAAACAACAATGTATAATGTTATATTTGCTTTTAATTGATATTAAAC
GTGGTTAATAGTATTTTTTC

Product: single stranded DNA specific exonuclease RecJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITVDNGIASFEGVD
AANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNMASFLD
LVALGTVADVVGLDQNNRIMVNQGMMRIRQGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECL
ITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKTWHQGVIGILAGRMKEKYHRP
VIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEG
EILTDGPLQSHELNLETAQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWPN
HRIKYVHAAYKLDINFYQGRTRLQLLIQAMNPVQQA

Sequences:

>Translated_516_residues
MRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITVDNGIASFEGVD
AANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNMASFLD
LVALGTVADVVGLDQNNRIMVNQGMMRIRQGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECL
ITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKTWHQGVIGILAGRMKEKYHRP
VIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEG
EILTDGPLQSHELNLETAQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWPN
HRIKYVHAAYKLDINFYQGRTRLQLLIQAMNPVQQA
>Mature_516_residues
MRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASKWQPHLIITVDNGIASFEGVD
AANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSKSIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNMASFLD
LVALGTVADVVGLDQNNRIMVNQGMMRIRQGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECL
ITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKTWHQGVIGILAGRMKEKYHRP
VIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLILKFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEG
EILTDGPLQSHELNLETAQLIQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWPN
HRIKYVHAAYKLDINFYQGRTRLQLLIQAMNPVQQA

Specific function: Single-stranded-DNA-specific exonuclease. Required for many types of recombinational events, although the stringency of the requirement for recJ appears to vary with the type of recombinational event monitored and the other recombination gene products whi

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recJ family [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=513, Percent_Identity=53.2163742690059, Blast_Score=551, Evalue=1e-158,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 57087; Mature: 57087

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASK
CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
WQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSK
CCCEEEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCHHHCCCCEEEECCCCCCCCCCCC
SIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIM
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
VNQGMMRIRQGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECL
ECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEE
ITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKT
EECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
WHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLIL
HHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEE
KFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELNLETAQL
EECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCCHHHHHH
IQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWPN
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCC
HRIKYVHAAYKLDINFYQGRTRLQLLIQAMNPVQQA
CCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRSEQRILIIGDFDADGATSTALAITALRAMGARFVEYLVPNRFEFGYGLTPAIVEVASK
CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
WQPHLIITVDNGIASFEGVDAANKMGIDVLITDHHLPAESLPDACAIVNPNQPGCLFPSK
CCCEEEEEECCCCCCCCCCCCHHHCCEEEEEECCCCCHHHCCCCEEEECCCCCCCCCCCC
SIAGVGVIFYVMLALRRHLSNCNWFNEINMPEPNMASFLDLVALGTVADVVGLDQNNRIM
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
VNQGMMRIRQGQCREGIKALIEIAGRDCSRLRESDLGFAIAPRLNAAGRLDDMSLGIECL
ECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEEE
ITTDPKMARNFCQQLDELNLERRQIESEMKEQAMLALEKLSINDEKNKHLPVALCLHDKT
EECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCC
WHQGVIGILAGRMKEKYHRPVIAFASVSEHELKGSARSVPDLNIRDVLAAVDKDNPGLIL
HHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEEE
KFGGHAMAAGLSISPELLNDFRSAFVSEVLKHLDLSQCEGEILTDGPLQSHELNLETAQL
EECCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCCHHHHHH
IQQAGPWGQAFAEPVFDNVFEILDQRIVGKNHLKMTLISSQGGEQLDAIAFNVDLKSWPN
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCC
HRIKYVHAAYKLDINFYQGRTRLQLLIQAMNPVQQA
CCEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8168497 [H]