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The map label for this gene is lspD [H]

Identifier: 148358852

GI number: 148358852

Start: 1520602

End: 1522977

Strand: Reverse

Name: lspD [H]

Synonym: LPC_0735

Alternate gene names: 148358852

Gene position: 1522977-1520602 (Counterclockwise)

Preceding gene: 148358854

Following gene: 148358851

Centisome position: 42.58

GC content: 40.32

Gene sequence:

>2376_bases
ATGCGCTCGATAGTAATTATACTTTTAGCCTTCGTTTGTTGTTCATTAGTACGTGCTAATGATGTCAATATTTCAACCGT
AACCAAAGATGGCAATACATTTTTTTATCTTCAGGCTGGTGCCTATAATCTCGAAAAAGACGCCAAAATACGCCAAAATG
AACTTGCCAAATTAGTCGATCAAAAAGTTGAAATTAAAAACCTGGCTGACAAACATCTTTACCTTGTGCAGATTGGTCCA
ATTGATGATTACCAAACTGCAAGAGCACTCAAAGAAAAGTTATCGCAAAAAACAGAAAAACAGTTTAAGCAAATTAGCAA
AAATCAAACCTCTTCACTTGAGGTAAGCCAACTGCCTAAGAATATGGAACAAGCGCAAACGGCTCCTCCAGGTAGTAAAT
TATGGAACTTACGTAACGCTGATATTAGGGCTGTAATCGCAGAAGTCTCTCGAATTACAGGTAAAAATTTTGTTATTGAT
CCCAGAGTGCAAGGAAAAGTATCGATTGTTTCATCAACGCCGTTATCCAGCCGCGAGCTATATCAAGTCTTTCTCTCAGT
ACTGCAGGTATCAGGTTATGCCGCAATACCTAATGGAGAAATTATCAAAATTATTCCTAATATTGATGCAAAAACACAGT
CACCTGACTTACTCAGTGGAATGAAGAGTCCTCCACGAGGTGACGATATGATGGTCGCCGTAATACCCGTTCATTATGTT
CCTTCTGAACAACTGGTACCTGTTCTAAGGCCACTAATGCCCCAATGGAGCAGCGTATCTGCCTATGCTCCTTCTAATAT
GTTGATCCTGTCTGGTCGAGCAAACAATATTAAAAGCCTTGCGGAAATTATCAAACAAGTAGATAGCTCAAGTGCAAACG
GCATAGACATGGTTCGTTTACATCATGCTTTGGCTATGGATGTTGCAAACACTTTAAAAGATCTGGTTAAAACTCAACCT
GGTATCGGCAGCAGAACACAAATTACCATTGCTGCAGATGACCGTTCCAACTCAATTTTAGTCAGTGGGAGCAAGACGGA
TAGAATTCGTTTGCGAATGCTCATATTGAAACTGGATAAAGACAGCTCAACAGGAGTCAATTCAAATACACAAGTTGTTT
ACCTGAATTATTTAAGAGCTGAAGATTTAGTCCCTATACTGGCAGGTATAGCCCAAGCCAATTTCAGTGGAAATGTAGGA
ACAACCATTGGAACCATTACAAGACCCGCATTAGACAGCACCAACCCTGCCTCCAGTCTTGCCAATACATCTGCCGATGG
ACAAAGCTCTTCATTAAGCTCCACTTCGACCAGTTCTGCCCCTATGAATGCGTCAGGAGCCACAGCAAATACGACATCAG
CAAGTACTCAAAATGAAGGCTCTACCAAGCCTACTGTACAGATAATAGGAGAACCTAACACTAACTCTATTATTCTTAAT
GCACCTGCTTCAATTATTCGCATTCTAAAAACAGTCATTTCTCAGCTAGATATAAAACCAGCTCAACTATTAATTGAGGC
CCTCGTTGCTGAAGTGGATGAAAAGGACGTTAACAATCTGGGAATAGAGTGGGGATCAAATCAACAAACAGGCAATCCCA
AGGATTTCAGACCAGGCTTCGCCATTATAAACAGTAAAACCAGGATTGATGATTTCCAGGCTCAAATTTATGCCTTGGCA
AGAGAGCAAAGAGCAAATATTTTATCAACTCCCTCCGTAGTTGTCCTTGATAATCGTCAAGCAAAAATACTCATAGGTAA
ACAGGTCTCAATAGCAACAACCAGCTACCCCAATAATGCAGGAGGCACTACCACAGCAAGTCCTTTCACAACATTTGACA
GGGTTAACGTTGCTTTGCACCTTTATGTAAGGCCGCAAATTACTCGCGGACAAGGAATTCAACTACAGATTGATCAAGGA
AATGATACTTTGGATCCTGCGACTGCTACAACAGACAACACAACAACCCCCACTTTTAATATAAGCAGTATTGTAACTTC
AGTTCATGTAGAAAGTGGTGATATTGTAGTACTTGGAGGGTTAATTCAGGACAGTATTGGAAATGACAATAATAAATTAC
CCATTTTAGGAGATATCCCTGGAATAGGCAGATTGTTCCAACGTAACATTCGCAACAGAGACAAGCGAGTACTCATGGTA
TTTATTAAACCTATCATATTACGCAACGAAAGAGATAACTTGCATGTCACAGGCGAAAAATACAATTATGTCCGTCAATA
TCAACTGGATTGGATTCGCTCCCAAGAGGCTTTTGAACAAACAGATGATGAAACAGTGTTGCCCCCATTAACTCAAGGTA
ATCTACCAGTGCCATTTAGCGCTCCCTCCCAATATCCATCAAAAATGACCAAATAA

Upstream 100 bases:

>100_bases
TAAAAACCACTTAAATTTCCTGCTCTAAGTTATTAAAAAAGCTATGGTAAGCAGTCAAATTTAGTTATTATGTCTTTATC
CATTATTTTACGGTTTTTAA

Downstream 100 bases:

>100_bases
ATCATGGAAAATGAAGAAAAATCACTTAAAATTCCTTACAGTTTTGCCAAAAGCAATGGAATTGTTGTGGGAGAAATACA
AGAAAATCTGGCTATTGTCT

Product: type II protein secretion LspD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 791; Mature: 791

Protein sequence:

>791_residues
MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP
IDDYQTARALKEKLSQKTEKQFKQISKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID
PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV
PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP
GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG
TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN
APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA
REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG
NDTLDPATATTDNTTTPTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV
FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSAPSQYPSKMTK

Sequences:

>Translated_791_residues
MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP
IDDYQTARALKEKLSQKTEKQFKQISKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID
PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV
PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP
GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG
TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN
APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA
REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG
NDTLDPATATTDNTTTPTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV
FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSAPSQYPSKMTK
>Mature_791_residues
MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP
IDDYQTARALKEKLSQKTEKQFKQISKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID
PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV
PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP
GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG
TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN
APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA
REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG
NDTLDPATATTDNTTTPTFNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV
FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSAPSQYPSKMTK

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=690, Percent_Identity=31.4492753623188, Blast_Score=295, Evalue=5e-81,
Organism=Escherichia coli, GI1789793, Length=273, Percent_Identity=23.4432234432234, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 86085; Mature: 86085

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVD
CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
QKVEIKNLADKHLYLVQIGPIDDYQTARALKEKLSQKTEKQFKQISKNQTSSLEVSQLPK
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
NMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVIDPRVQGKVSIVSSTPLSSREL
HHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCHHHH
YQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV
HHHHHHHHHHCCEEECCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEC
PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRL
CCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHH
HHALAMDVANTLKDLVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDK
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECC
DSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSL
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHH
ANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGF
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCE
AIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNA
EEECCCCCCHHHHHHHHHHHHHHHCCEECCCCEEEECCCCEEEEEECEEEEEEECCCCCC
GGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPTFN
CCCCCCCCCCEEEEEEEEEEEEEECEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
ISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV
HHHHEEEEEECCCCEEEECCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFS
EECHHHEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
APSQYPSKMTK
CCCCCCHHCCC
>Mature Secondary Structure
MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVD
CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
QKVEIKNLADKHLYLVQIGPIDDYQTARALKEKLSQKTEKQFKQISKNQTSSLEVSQLPK
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC
NMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVIDPRVQGKVSIVSSTPLSSREL
HHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCHHHH
YQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV
HHHHHHHHHHCCEEECCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEC
PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRL
CCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHH
HHALAMDVANTLKDLVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDK
HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECC
DSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSL
CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHH
ANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE
APASIIRILKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGF
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCE
AIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNA
EEECCCCCCHHHHHHHHHHHHHHHCCEECCCCEEEECCCCEEEEEECEEEEEEECCCCCC
GGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPTFN
CCCCCCCCCCEEEEEEEEEEEEEECEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE
ISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV
HHHHEEEEEECCCCEEEECCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE
FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFS
EECHHHEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
APSQYPSKMTK
CCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]