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The map label for this gene is flgD [H]

Identifier: 148358805

GI number: 148358805

Start: 1468549

End: 1469226

Strand: Direct

Name: flgD [H]

Synonym: LPC_0687

Alternate gene names: 148358805

Gene position: 1468549-1469226 (Clockwise)

Preceding gene: 148358804

Following gene: 148358806

Centisome position: 41.06

GC content: 41.45

Gene sequence:

>678_bases
ATGACTACCAATTCAGTAAATGGTTCCAATTCAACAGGTGGTTTAGGTTTGAATCAAATTGATTCAGATAAAAGACAAAA
CTTGGGACAACAGGATTTTTTGCGATTGATGGTGGCACAAGTTCAAAATCAAGATCCTCTGCAACCACAGGCAAATGGCG
AGTTTTTATCTCAACTGGCTCAGTTTAGCACCAATGATGGAATCACAAAAATGCAAGAATCACTGCAACAATTAGCTTCA
TCTCTACAATCTAATCAAGCGCTTCAAGCATCCGCTTTAGTTGGTCGCAAGGTGTTGGTAAACAGCAATACCCTGAGTCT
GGGTACAGAAGGAGATGTAAAGGCTGCCATTGATATGGCACCTGGTGTTTCTAATCTTCGTGCCGCAATCTACACGGAAT
CTGGCGAGTTGATAAAAACTATTCCCTTGGGGCAGCCAGAACCCGGGTTTTTCCAATTTAGTTGGGATGGTACTGACCAA
AGTAATCAACGTTTAGCATCAGGAAGATATACAATAAAGGTTACTGGTACTTATGGCGGACAAGAAGTAGCATTGAAAAC
TATGACGTCAGCCAATGTCGATAGTGTCAGTCTTGGGCAAAATGGCGAGGATCTAAAGCTTAATGTAGCGGGCGTAGGAT
CAGTCTATTTAAGTCAGGTAAGGCAAATATCAATATAA

Upstream 100 bases:

>100_bases
ATTTCAGCTTCTCGGTCTTATCAAATGAATATTGAATTACTTAATACAACCAAACAACTTATGCAAAGGACGCTGCAATT
AGGCGAATAAGGGGAAGGGA

Downstream 100 bases:

>100_bases
GTCAATGATTTCGGTCACCGTGGCCTTATTGAAACGATGGCTTAAGTCACAAGCGCATTGCTTATAAAGCGGTCAAGGGC
AAATGCTAAAAAATTATAAA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTTNSVNGSNSTGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLAS
SLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQ
SNQRLASGRYTIKVTGTYGGQEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISI

Sequences:

>Translated_225_residues
MTTNSVNGSNSTGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLAS
SLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQ
SNQRLASGRYTIKVTGTYGGQEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISI
>Mature_224_residues
TTNSVNGSNSTGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLAQFSTNDGITKMQESLQQLASS
LQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMAPGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQS
NQRLASGRYTIKVTGTYGGQEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISI

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=201, Percent_Identity=33.8308457711443, Blast_Score=111, Evalue=4e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23915; Mature: 23784

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTNSVNGSNSTGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLA
CCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
QFSTNDGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMA
HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCEEECCCCCCCEEEEECC
PGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQSNQRLASGRYTIKVTGTYGG
CCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHCCEEEEEEEECCCC
QEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISI
CEEEEEECCCCCCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCC
>Mature Secondary Structure 
TTNSVNGSNSTGGLGLNQIDSDKRQNLGQQDFLRLMVAQVQNQDPLQPQANGEFLSQLA
CCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
QFSTNDGITKMQESLQQLASSLQSNQALQASALVGRKVLVNSNTLSLGTEGDVKAAIDMA
HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEEEECCEEECCCCCCCEEEEECC
PGVSNLRAAIYTESGELIKTIPLGQPEPGFFQFSWDGTDQSNQRLASGRYTIKVTGTYGG
CCCCCCEEEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHCCEEEEEEEECCCC
QEVALKTMTSANVDSVSLGQNGEDLKLNVAGVGSVYLSQVRQISI
CEEEEEECCCCCCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]