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The map label for this gene is yddE [C]

Identifier: 148358796

GI number: 148358796

Start: 1460867

End: 1461655

Strand: Direct

Name: yddE [C]

Synonym: LPC_0678

Alternate gene names: 148358796

Gene position: 1460867-1461655 (Clockwise)

Preceding gene: 148358794

Following gene: 148358797

Centisome position: 40.85

GC content: 39.16

Gene sequence:

>789_bases
ATGAAAAGCTTACCAATCTACCAAGTGGATGCATTTGCCTCAAATTTATTCAAAGGTAATCCTGCCGCTGTTTGTCCTTT
GGATAAATGGTTAAGTGATGAGACTATGCAAGCCATTGCAGCTGAAAACAATTTATCTGAAACAGCCTTTTTTGTTCCCG
AAACCGATGGATACAGGATCCGGTGGTTTACCCCCAATGAAGAAGTGGCATTGTGCGGCCATGCCACTCTTGCCAGCTCT
TATGTACTTTTTAATCAATTGGGCTTTTCAGGGGAAGAAATTATATTTAATAGTTTGAGTGGTAAGCTATGGGTTAAAAA
CACAGATCAAGGCTTGGTTATGGATTTCCCAGTTCTGCCCTATGAAGAAATTAATTTCAGTGCCGAACTGCAGCATTTGA
ATTTAAAAAGGCCATTTAAAGCATTGCGAAGCCAATTTGATTTGATGTTTGTGTATCAAAATGCAGAAGAAGTAGTTGAG
GCAAAGCCTGATTTGAATGCTGTGGCTCATCTTGACTATAGGGGGTTAATATTAACTGCTCCAGGAATATCAACTGATGT
TTATTCTCGTTGTTTTTATCCTGGATGTAATGTACCAGAAGACCCGGTAACAGGATCTGCTCATTGTGTTATTGCTCCTT
ATTGGTGTGAACAGTTAAGCAAGAACCATATAACCGCTTTACAAGGAGGCTTCAGACAAGGTGAGCTTTATTGTGAAGTG
AAGGGAAACAGAGTATTACTCTATGGAAATTGCCATCTTTATTTGGAAGGAAGAATATATTTGCCATGA

Upstream 100 bases:

>100_bases
TTTAGCAGAGAGGAAAGATACATCAATTTCTCATTATTAAATAGCTTGCTATATAATAACAGGCTATGTTATTATTCGCA
AGTTGTTTTAGGAGACATTT

Downstream 100 bases:

>100_bases
AATATTTAACAACCCCAAGGCTTTTGCTAAGAGCGTGGGATGAAGAAGATACTATCCCCATTCTATAGAATGAGTCAGGA
TCCTCGGGTCATGAAGTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPETDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLSKNHITALQGGFRQGELYCEV
KGNRVLLYGNCHLYLEGRIYLP

Sequences:

>Translated_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPETDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLSKNHITALQGGFRQGELYCEV
KGNRVLLYGNCHLYLEGRIYLP
>Mature_262_residues
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPETDGYRIRWFTPNEEVALCGHATLASS
YVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLPYEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVE
AKPDLNAVAHLDYRGLILTAPGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLSKNHITALQGGFRQGELYCEV
KGNRVLLYGNCHLYLEGRIYLP

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=292, Percent_Identity=36.3013698630137, Blast_Score=159, Evalue=2e-39,
Organism=Homo sapiens, GI74316009, Length=257, Percent_Identity=36.5758754863813, Blast_Score=144, Evalue=5e-35,
Organism=Escherichia coli, GI1787737, Length=226, Percent_Identity=35.3982300884956, Blast_Score=90, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=314, Percent_Identity=34.0764331210191, Blast_Score=141, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17542154, Length=314, Percent_Identity=34.0764331210191, Blast_Score=141, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17542158, Length=311, Percent_Identity=33.4405144694534, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17542152, Length=311, Percent_Identity=33.4405144694534, Blast_Score=126, Evalue=1e-29,
Organism=Saccharomyces cerevisiae, GI6321818, Length=291, Percent_Identity=28.1786941580756, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29439; Mature: 29439

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPETDGYRI
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCEEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCC
YEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVEAKPDLNAVAHLDYRGLILTA
HHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLSKNHITALQGGFRQGELYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCEEECCCCCCCCEEEEEE
KGNRVLLYGNCHLYLEGRIYLP
ECCEEEEEECEEEEEEEEEECC
>Mature Secondary Structure
MKSLPIYQVDAFASNLFKGNPAAVCPLDKWLSDETMQAIAAENNLSETAFFVPETDGYRI
CCCCCEEEHHHHHHHHCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCEEEEEECCCCEEE
RWFTPNEEVALCGHATLASSYVLFNQLGFSGEEIIFNSLSGKLWVKNTDQGLVMDFPVLP
EEECCCCCEEEEECHHHHHHHHEEHHCCCCCCEEEEECCCCEEEEEECCCCEEEECCCCC
YEEINFSAELQHLNLKRPFKALRSQFDLMFVYQNAEEVVEAKPDLNAVAHLDYRGLILTA
HHHCCCEEEEEECCCCCHHHHHHHCCEEEEEEECHHHHHHCCCCCCEEEEECCCEEEEEC
PGISTDVYSRCFYPGCNVPEDPVTGSAHCVIAPYWCEQLSKNHITALQGGFRQGELYCEV
CCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHCCCCCEEECCCCCCCCEEEEEE
KGNRVLLYGNCHLYLEGRIYLP
ECCEEEEEECEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]