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The map label for this gene is lptF [H]

Identifier: 148358635

GI number: 148358635

Start: 3148012

End: 3149091

Strand: Reverse

Name: lptF [H]

Synonym: LPC_0511

Alternate gene names: 148358635

Gene position: 3149091-3148012 (Counterclockwise)

Preceding gene: 148358632

Following gene: 148358636

Centisome position: 88.05

GC content: 41.94

Gene sequence:

>1080_bases
GTGATTATTTTTCGTTATTTGACTAAAGAAGTGTTTCTTACTCTAATCGCATTAACCGCGATATTAGTCCTTATTTTCAT
GAGTAATCAATTCATACAATACTTAAATCGCGCTGCTTCTGGTTCAATTCCTGGTTTTGTGATCATGAAGTTGTTGATGT
TGGAGTTGCCAAATTTAATGGGTCTATTACTGCCCCTGGGGTTTTATGTCGCTCTTTTATTGGCGTATGGCCGGTTATAT
GCCGAAAGCGAAATGACGGTTCTGCGAGCTTGTGGTTATGGCCCCAGGCAATTACTGAAACACAGCTTTGCCATGGCTAC
TGTTGTGTTGGTAGTGGTTGCCATCGTAATGATTTGGGCAAGTCCTGTGATTGCTGTTGAACGCACCAAGTTAATACGTT
CTACAGGAATCAAAACTTTAATTCAAACGATTATGCCTGGACGCTTTCATGCCATTAATAGCGGTCAACAAATCTTTTAT
GTCCAATCCATGAATCGTGATCACTCCCAAGCAGAACAGATATTCATGGCAAAACATAGCGTTCAGGATAATAAGCTGTT
ATGGGATGTGTTGTGGGCAGATAAAGCATTTGCTGAGGTTAATCCTCAAACAGGCGAGGAATACATCGTGCTGCAAAATG
GCAAGGAATATCAAGGTGTTCCGGGTCATGCTGATTACCAGATTGCAGAATTTGCAAGCTATAAATCCAAATTGCCCAAC
CCGACTGTTGTTATGAATGATGATGCCCGCACTGCAAAAACCAGAGACTTATGGCCTTTGAATAATCATGATTTGAAAAA
GGCGGCTGAATTACAGTGGCGTATTTCCATTCCTTTAATGGTTTTGACCCTGACTCTGGTTGCCGTTCCACTTAGTCGTG
TCAGCCCTCGTTCTGGAAAATATTCGAAACTTTTGCCAGCCATCATTATCTATATTTTTTATGCTAATTTTATGTTTGTT
TCTCGTGATGCGATTGCTACCGGGAAGATTCCCTGGTGGATAGGGATGTGGTGGGTACACGTGGCGGTTGCCATTCTCGG
CATCCTATTTATTTGGCGAAATCAGGTGAAGCTTGCATGA

Upstream 100 bases:

>100_bases
TATTTTTAAATAGGCTGTCTTGAATTATCATGATGGGTTCTTTCATATGTTATTCTGAAAGAATTGAATTAATTGATAAG
GTCTTCTGTAGGGTATTGTA

Downstream 100 bases:

>100_bases
GCAGAAAAATACTTGATCGTTATATTGCCAAAACGGTTTTATCTGCAATCGGCTTGGTGACTTTGATGCTGGTCGGTTTG
CAGATCTTTATTTTGTTTGT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLY
AESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFY
VQSMNRDHSQAEQIFMAKHSVQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
PTVVMNDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFV
SRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA

Sequences:

>Translated_359_residues
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLY
AESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFY
VQSMNRDHSQAEQIFMAKHSVQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
PTVVMNDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFV
SRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
>Mature_359_residues
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYVALLLAYGRLY
AESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWASPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFY
VQSMNRDHSQAEQIFMAKHSVQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
PTVVMNDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFV
SRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=355, Percent_Identity=29.0140845070423, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40662; Mature: 40662

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC
VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
PTVVMNDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK
CEEEECCCCCCCCCCCCCCCCCCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCCC
YSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GLLLPLGFYVALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVMIWA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC
VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
PTVVMNDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK
CEEEECCCCCCCCCCCCCCCCCCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCCC
YSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]