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The map label for this gene is ybdK [C]

Identifier: 148358543

GI number: 148358543

Start: 3248288

End: 3249439

Strand: Direct

Name: ybdK [C]

Synonym: LPC_0414

Alternate gene names: 148358543

Gene position: 3248288-3249439 (Clockwise)

Preceding gene: 148358545

Following gene: 148358542

Centisome position: 90.82

GC content: 35.85

Gene sequence:

>1152_bases
ATGAGATTATTATCTTTTAAAAAATCCAAAATTGTTTCAATTGGAACTGAATTGGAGTTTCAGATTATTGATCGCAGTTC
ATTGTCTCTAGTTTCTCGTTCAAAAGAATTGATGAGAGCCTTAAAAGACATGCGCTATCGCGACCAAATTAAGCCGGAAA
TTACGCAAAGCATGATTGAAATCAATTCATCCATTCATCAATCCGCTAAAGAAATGTATGACGAACTGTTAGAGCTACAA
AAAATTTTAGTAGAAACCGCTGCAAGCATTGATATTGCTTTTTGCGGCGGAGGGACACATCCATTTCAACAATGGACCAT
GCAAAAAATTTTCCCTTCGAAACGATTCAAAAAAAAATTTAACCAATATCGTTATCTCAGCAAGCGTGCTACTGTTTTTG
GACAACATATTCATATCGGCTGCCCAACAGGAGACGATGCCATTTATTTAACTCATGCCCTGGCAAGATATGTGCCTCAC
TTTATTGCAATCAGCGCTTCATCACCTTTCTATCTGGGTATTAATACAAATTATTGCTCATCACGCTCGACTATTTTTAA
TGCTTTTCCATTAAGTGGTGTCATTCCCTATCTGAGAAATTGGCAAGAATTCTCTGATTATTATCGCAAAATGTATCGTT
GGAAAATCATTGAAAATATGAAAGACTTTTATTGGGACATTAGACCAAAACCAGAACTTGGTACAATAGAAATAAGAGTC
TGCGACACCCCCTTAACTCTTAGAAAATCGATTCTTATTACTGCTTATATTCAAGCATTGGCGCTCTATCTCCTCAAAGA
GAAACCTGTCCAGCTGTCTCATGATTTATACTATGTCTATAATTACAACAGGTTCCAAGCCAGCAGACATGGTCTGGAAG
GAGAATTAACTGTCACTGATAAAGACAAGCCCATACTTATCATGGATGACATACTTGAAACAATAAAAAAAATTGAACAA
TACATTAATGGACTTGGAAACAGCGAATATATTGAGGAACTGTATAGTGACGTCATCAATAAACAAAATGATAGTGTTCT
CATAAATAAAATTTATAAACAAGATGGCTCATTTACCAAGCTGGTAGCTGCACAGTGCGAATTATGGTTAAGTGATTCAA
AGGATAGGAAATGGATGACACAACCTTCTTAA

Upstream 100 bases:

>100_bases
GGGAAATATGAAGCTTTATATCTATTCACATTAGACAATCATCTAGCCAAAAAACCTGTCTGCTATACTTAAACAAGGAA
AATAATAGTCAGAGAAAGGA

Downstream 100 bases:

>100_bases
ATACGAAAGAAAAAATCCTGGAAATCAAACCATTAATGGAAAGTGCTTTCGGCAATATTCTAGGATATCAAGAACTGGAG
AATATGTTGGCAATCTGTAC

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 383; Mature: 383

Protein sequence:

>383_residues
MRLLSFKKSKIVSIGTELEFQIIDRSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIEINSSIHQSAKEMYDELLELQ
KILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKFNQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPH
FIAISASSPFYLGINTNYCSSRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CDTPLTLRKSILITAYIQALALYLLKEKPVQLSHDLYYVYNYNRFQASRHGLEGELTVTDKDKPILIMDDILETIKKIEQ
YINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFTKLVAAQCELWLSDSKDRKWMTQPS

Sequences:

>Translated_383_residues
MRLLSFKKSKIVSIGTELEFQIIDRSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIEINSSIHQSAKEMYDELLELQ
KILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKFNQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPH
FIAISASSPFYLGINTNYCSSRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CDTPLTLRKSILITAYIQALALYLLKEKPVQLSHDLYYVYNYNRFQASRHGLEGELTVTDKDKPILIMDDILETIKKIEQ
YINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFTKLVAAQCELWLSDSKDRKWMTQPS
>Mature_383_residues
MRLLSFKKSKIVSIGTELEFQIIDRSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIEINSSIHQSAKEMYDELLELQ
KILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKFNQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPH
FIAISASSPFYLGINTNYCSSRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CDTPLTLRKSILITAYIQALALYLLKEKPVQLSHDLYYVYNYNRFQASRHGLEGELTVTDKDKPILIMDDILETIKKIEQ
YINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFTKLVAAQCELWLSDSKDRKWMTQPS

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=372, Percent_Identity=38.9784946236559, Blast_Score=318, Evalue=3e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 44733; Mature: 44733

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLSFKKSKIVSIGTELEFQIIDRSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIE
CCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
INSSIHQSAKEMYDELLELQKILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHH
NQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPHFIAISASSPFYLGINTNYCS
HHHHHHHHHHHHEECEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCC
SRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CCCHHEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
CDTPLTLRKSILITAYIQALALYLLKEKPVQLSHDLYYVYNYNRFQASRHGLEGELTVTD
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCHHHHHHCCCCCEEEEEC
KDKPILIMDDILETIKKIEQYINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFTK
CCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
LVAAQCELWLSDSKDRKWMTQPS
HHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLSFKKSKIVSIGTELEFQIIDRSSLSLVSRSKELMRALKDMRYRDQIKPEITQSMIE
CCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
INSSIHQSAKEMYDELLELQKILVETAASIDIAFCGGGTHPFQQWTMQKIFPSKRFKKKF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHH
NQYRYLSKRATVFGQHIHIGCPTGDDAIYLTHALARYVPHFIAISASSPFYLGINTNYCS
HHHHHHHHHHHHEECEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCC
SRSTIFNAFPLSGVIPYLRNWQEFSDYYRKMYRWKIIENMKDFYWDIRPKPELGTIEIRV
CCCHHEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
CDTPLTLRKSILITAYIQALALYLLKEKPVQLSHDLYYVYNYNRFQASRHGLEGELTVTD
ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEECCHHHHHHCCCCCEEEEEC
KDKPILIMDDILETIKKIEQYINGLGNSEYIEELYSDVINKQNDSVLINKIYKQDGSFTK
CCCCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHH
LVAAQCELWLSDSKDRKWMTQPS
HHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA