Click here to switch to the map view.

The map label for this gene is 148358435

Identifier: 148358435

GI number: 148358435

Start: 314345

End: 315331

Strand: Direct

Name: 148358435

Synonym: LPC_0301

Alternate gene names: NA

Gene position: 314345-315331 (Clockwise)

Preceding gene: 148358434

Following gene: 148358436

Centisome position: 8.79

GC content: 41.95

Gene sequence:

>987_bases
ATGAAATTACATGCTTATTCTATGATTAGTAAACTTCCCAAGCCTCAAAAAATAGCGAAAATAATTTTCATTGTTTTTGT
TGCCATTATTCTTTTCTTAAGTTTTACTCCGTGGCAACAGTTTGCATTAGGCAACGGAAAAGTCATCGCCTTTTCACCAA
CAGAGAGGCAGCATACGGTTAATTCACCTGTTAGCGGGCGAATAAAGAAATGGTATGTCGACGAAGGTATGCGTGTTAAA
CCAGGAGATCCAATAGTCGATATTACCGACAATGATCCGGAGCTTTTGTCACGTCTTGAAGTCGAGAAAAAGGCGATTTT
GCTTCGTATAGAAGCAGCCAAACAAGCTATTGCTGCAGGTAAAGCCAATGTTGACAGACAAAAGAAATTGTATGAACAGG
GAATTAACTCGAGAAGGCAATATGAATTGGCACAAATTGAATATGCAAAATACCAAAATGACCTTGCGCAGGCGAATATT
GACAAAGTGAATGTCGATGTCCGAATTGCTCGTCAAAAAACACAAATCATTAAGGCCCATGTCGCAGGTATCATCTTTAG
ACGTTTGACAGGTCAGGAAAGTGTCGTTGTCAACGCAGGCGATGTATTGGCTCAAATTCTGCCTGAAACAGAGTCTCGCG
CTGTTGAATTATGGGTTGATGGCAATGATATACCTTTCGTACGCCTTAATCAAAAAGCCCGTTTGCAATTTGAAGGATGG
CCTGCTATTCAATTTCGCGGATGGCCAGAAATTGCAGTCGGAACATTTGGAGGTACAGTCTCCTTTATTGATCCTACGGA
TAATGGCTTTGGCTTATTCCGTGTAGTGATTGTTCCTAATGAGCCATGGCCTAGTGTGCGTTTTTTACGGCAAGGAGTGC
GGGTGCATGGGTGGATCCAATTGGGTCAAGTTCCTTTATGGTATGAGCTTTGGCGTCAGTATAATGGTTTCCCACCGGAA
AGTAATCGCGAGAATAAAGCATCATGA

Upstream 100 bases:

>100_bases
AGATGATGGAATTGGTATTGTCTTTAAAAAATACGCTACTACTGATCGTGAGCCAACGGTCCGATTTTAACTATTTAAAT
AACCGCCTGGTGATTTCCTC

Downstream 100 bases:

>100_bases
TTTGTTTTCCTTCAGGCAAAAACAGATTGATGGTTTTATGTTTGTTCTTGATGCTGTCATTCAAGTGTTTTCCAATACCA
GCCAAACCTTTGCTGCTTGA

Product: RND efflux membrane fusion protein

Products: NA

Alternate protein names: Secretion Protein HlyD; Secretion Protein HlyD Family Protein; Outer Membrane Efflux Protein; Multidrug Resistance Efflux Pump-Like Protein; HlyD Family Secretion Protein; Membrane Fusion Protein; ABC Transporter Membrane Fusion Efflux Protein; Efflux Transporter Membrane Fusion Protein; Secretion Protein; RND Efflux Membrane Fusion Proteins; Signal Peptide; Biotin/Lipoyl Attachment Domain-Containing Protein; Xin Secretion Protein; Multidrug Resistance Efflux Pump

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKLHAYSMISKLPKPQKIAKIIFIVFVAIILFLSFTPWQQFALGNGKVIAFSPTERQHTVNSPVSGRIKKWYVDEGMRVK
PGDPIVDITDNDPELLSRLEVEKKAILLRIEAAKQAIAAGKANVDRQKKLYEQGINSRRQYELAQIEYAKYQNDLAQANI
DKVNVDVRIARQKTQIIKAHVAGIIFRRLTGQESVVVNAGDVLAQILPETESRAVELWVDGNDIPFVRLNQKARLQFEGW
PAIQFRGWPEIAVGTFGGTVSFIDPTDNGFGLFRVVIVPNEPWPSVRFLRQGVRVHGWIQLGQVPLWYELWRQYNGFPPE
SNRENKAS

Sequences:

>Translated_328_residues
MKLHAYSMISKLPKPQKIAKIIFIVFVAIILFLSFTPWQQFALGNGKVIAFSPTERQHTVNSPVSGRIKKWYVDEGMRVK
PGDPIVDITDNDPELLSRLEVEKKAILLRIEAAKQAIAAGKANVDRQKKLYEQGINSRRQYELAQIEYAKYQNDLAQANI
DKVNVDVRIARQKTQIIKAHVAGIIFRRLTGQESVVVNAGDVLAQILPETESRAVELWVDGNDIPFVRLNQKARLQFEGW
PAIQFRGWPEIAVGTFGGTVSFIDPTDNGFGLFRVVIVPNEPWPSVRFLRQGVRVHGWIQLGQVPLWYELWRQYNGFPPE
SNRENKAS
>Mature_328_residues
MKLHAYSMISKLPKPQKIAKIIFIVFVAIILFLSFTPWQQFALGNGKVIAFSPTERQHTVNSPVSGRIKKWYVDEGMRVK
PGDPIVDITDNDPELLSRLEVEKKAILLRIEAAKQAIAAGKANVDRQKKLYEQGINSRRQYELAQIEYAKYQNDLAQANI
DKVNVDVRIARQKTQIIKAHVAGIIFRRLTGQESVVVNAGDVLAQILPETESRAVELWVDGNDIPFVRLNQKARLQFEGW
PAIQFRGWPEIAVGTFGGTVSFIDPTDNGFGLFRVVIVPNEPWPSVRFLRQGVRVHGWIQLGQVPLWYELWRQYNGFPPE
SNRENKAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37283; Mature: 37283

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHAYSMISKLPKPQKIAKIIFIVFVAIILFLSFTPWQQFALGNGKVIAFSPTERQHTV
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCC
NSPVSGRIKKWYVDEGMRVKPGDPIVDITDNDPELLSRLEVEKKAILLRIEAAKQAIAAG
CCCCCCCEEEEEECCCCEECCCCCEEEECCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHC
KANVDRQKKLYEQGINSRRQYELAQIEYAKYQNDLAQANIDKVNVDVRIARQKTQIIKAH
CCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHH
VAGIIFRRLTGQESVVVNAGDVLAQILPETESRAVELWVDGNDIPFVRLNQKARLQFEGW
HHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCEEEEECCC
PAIQFRGWPEIAVGTFGGTVSFIDPTDNGFGLFRVVIVPNEPWPSVRFLRQGVRVHGWIQ
CEEEECCCCCEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHCCCEEEEEEE
LGQVPLWYELWRQYNGFPPESNRENKAS
ECCCCHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLHAYSMISKLPKPQKIAKIIFIVFVAIILFLSFTPWQQFALGNGKVIAFSPTERQHTV
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCCC
NSPVSGRIKKWYVDEGMRVKPGDPIVDITDNDPELLSRLEVEKKAILLRIEAAKQAIAAG
CCCCCCCEEEEEECCCCEECCCCCEEEECCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHC
KANVDRQKKLYEQGINSRRQYELAQIEYAKYQNDLAQANIDKVNVDVRIARQKTQIIKAH
CCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEHHHHHHHHHH
VAGIIFRRLTGQESVVVNAGDVLAQILPETESRAVELWVDGNDIPFVRLNQKARLQFEGW
HHHHHHHHHCCCCEEEEEHHHHHHHHCCCCCCCEEEEEECCCCCCEEEECCCEEEEECCC
PAIQFRGWPEIAVGTFGGTVSFIDPTDNGFGLFRVVIVPNEPWPSVRFLRQGVRVHGWIQ
CEEEECCCCCEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHCCCEEEEEEE
LGQVPLWYELWRQYNGFPPESNRENKAS
ECCCCHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA