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The map label for this gene is dgdR [H]

Identifier: 148358433

GI number: 148358433

Start: 311866

End: 312717

Strand: Direct

Name: dgdR [H]

Synonym: LPC_0299

Alternate gene names: 148358433

Gene position: 311866-312717 (Clockwise)

Preceding gene: 148358426

Following gene: 148358434

Centisome position: 8.72

GC content: 40.14

Gene sequence:

>852_bases
ATGTCAATTGATACAATCACACTACAATGCTTTCTGGCAGTGGCTGAAACGCAAAGTTTTACCAAGGCGGCACAGCGGGT
TGGACGCACCCAATCGGCTATCAGTCAGCAAATAGCTAAATTGGAAAACCTGATTGAAAAACCTCTAATTAATCGTGGCC
GAGAACTTTCTCTGACCACGGATGGTGAAATATTTTTAGGGTATGCCAAACGAATTTATGAATTGCATCGAGAATCTTTA
GATCGTTTTAAAGCGCCTGAGTTACAAGGTGAAATACGCTTCGGATTACCAGAGGATTTTGCCAGTATTATTTTATCGGA
CGTACTTGTTGAATTTTCAAGATTGCATCCACGAGTCTTATTGAATGTAGAATGTGATCTGACTCTGAATCTGATCGAGC
GTTTTAATGAAGGTAAATTTGACTTAATTCTCATTAAAACGACTCAGCAACAGGTTGGTTCTGAGTCTATCCATGTTTGT
ACAGAACCCGTTGAGTGGATAGGGAAAAAAGAATTATTACCTCTTTTAGACAAACCGGGGCCAATTCCCTTAGTGCTTTC
ACCAACACCCTGCGTTTATCGAGGCAATGTGATTGATACACTGGATAAAAACCATATTGATTGGCGCCTTGTTTACAGTA
GCGCAAGTTATGCGGGAAAAATGGCAGCTGTGCGCGCCGGGTTAGGAATTACAGCTATTCAGCGCAGCATGATCCCAAAC
TATCTGGAACGGCTCGATTACGATTTTCTCCCTGTTTTGAACGATGTCCATGTCTCTTTATTAAAAAAGAGTGACAGCAA
TAAAGCAATTGAATCGCTTGAGTTTTTTATATTGCAAAAATTAAAACATTAA

Upstream 100 bases:

>100_bases
TTAATTCCCCATTAGAAAATCTGTTATTATTGTGGAAATATATTAGATATGTTAATATAAGTAAAATTAAAAATAATGAT
TTAAACTATTAGAAAAACTT

Downstream 100 bases:

>100_bases
TAGCATAAACAAGAATCAAGGGTAAAAGGGATGTTTAGGGAATGAATGCAAAACCAATTAATTCAATTATTGATGTATTA
GATCGCCAAACAATCTCATC

Product: LysR family transporter transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTTDGEIFLGYAKRIYELHRESL
DRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVLLNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSESIHVC
TEPVEWIGKKELLPLLDKPGPIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
YLERLDYDFLPVLNDVHVSLLKKSDSNKAIESLEFFILQKLKH

Sequences:

>Translated_283_residues
MSIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTTDGEIFLGYAKRIYELHRESL
DRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVLLNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSESIHVC
TEPVEWIGKKELLPLLDKPGPIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
YLERLDYDFLPVLNDVHVSLLKKSDSNKAIESLEFFILQKLKH
>Mature_282_residues
SIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTTDGEIFLGYAKRIYELHRESLD
RFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVLLNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSESIHVCT
EPVEWIGKKELLPLLDKPGPIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPNY
LERLDYDFLPVLNDVHVSLLKKSDSNKAIESLEFFILQKLKH

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=272, Percent_Identity=34.9264705882353, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787806, Length=239, Percent_Identity=25.9414225941423, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=35.042735042735, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32006; Mature: 31874

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTT
CCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DGEIFLGYAKRIYELHRESLDRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEE
LNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSESIHVCTEPVEWIGKKELLPLLDKPG
EEEECCHHHHHHHHCCCCCEEEEEEEECHHHHCCCCEEEECCHHHHCCCHHHHHHHCCCC
PIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
CEEEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHH
YLERLDYDFLPVLNDVHVSLLKKSDSNKAIESLEFFILQKLKH
HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTT
CCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DGEIFLGYAKRIYELHRESLDRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEE
LNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSESIHVCTEPVEWIGKKELLPLLDKPG
EEEECCHHHHHHHHCCCCCEEEEEEEECHHHHCCCCEEEECCHHHHCCCHHHHHHHCCCC
PIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
CEEEEECCCCCEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHH
YLERLDYDFLPVLNDVHVSLLKKSDSNKAIESLEFFILQKLKH
HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]