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The map label for this gene is yddU [C]

Identifier: 148358211

GI number: 148358211

Start: 69902

End: 71443

Strand: Direct

Name: yddU [C]

Synonym: LPC_0072

Alternate gene names: 148358211

Gene position: 69902-71443 (Clockwise)

Preceding gene: 148358210

Following gene: 148358212

Centisome position: 1.95

GC content: 35.93

Gene sequence:

>1542_bases
ATGAACAAGTTGCCCAAATGGGCACTTGCTGAAAAGAAAGAGTTTAAGCGGGAGAAGATTCAATCGTTATTGATTGTTCC
CATGGAAAAAGAAAATTCTTTGGTTGGATTCATGGGGTTTGATATAGTCACTCATAAAAAACAGTGGCTTGCAGAAGATA
TTTTTATGTTGAGTACAGTGGCAGACATTGTCATTCAATCCATATTGAAATCCTACACCATCATAGAGCATGAATCGATT
GTTCGATATTTTGACCCACTGACAAGACTTCCGAACAAAGAATTGTTTGTCAACTATCTTCAAGCTGTATTATCTAACAT
TGAGCAACAGGAAAATTGTTTTTCCTTTTTAATTTTGTTGAATATTGATGAATTCCATATTATTAATGATGCTTATGGAA
CGCCTTTTGGTGATCAACTGTTATTTATTATTGCAGAAAAGTTATTGCATATACTGCCTTACAAGGCGAAATTATGCCGC
CTTGAAGCTGATCGTTTTCTCATTTTGCTGCAGGGGAATAAAGCAGAAATCTTAAAGATTGCCGATGAGATTTTATCCAT
GTTTAATCATGTTTTTAAGCTAAATAACCACCAAGTTTATTTGCAAGCCAGAATTGGGGTTACTAAGATAGACAATCATT
CTGATAATCCAGAAAAATTAATACAACGAGCTAGCCTCGCCATGAGGAAAGCAAGGTTGGATAATATAAAAATCGCAATT
TTTGAATCTAACACTGAAAAATCCGTAAATTTAAAATTAAATATTCAAGCCGAATTGTACCAAGCGATCACTGAGAATCA
GTTAGTGTTACATTATCAACCGCAATTTTGCGCAAAAACAAAGCAGATTGTGGCTTTGGAAGCTCTACTACGTTGGATGC
ACCCTAAAAAAGGACTTTTATACCCTAGTGAATTTCTCGATGTGCTGCTGTGTTCTGATTTGCTTTTACCCGCGGGTGAG
TGGGTGCTAAAAACAGTCTGTGCTCAAAACGTAGCATGGATAAAACAAGGACTTAGACCGGTTAGTATCGCAGTCAATAT
ATCCGAGCCTCAATTTAGGCAACCTAATTTTGTCCCCATGCTGAAAAAAATACTAACAAAGACCCATATGGATCCCTGCT
TATTGAAATTAGAAGTAACAGAGCAGGTGATGATTGATCACTTGGATGAAACGGCTAGGAAATTACATGAGATAGAAGCT
CATAATATACAAATTATATTGGATGACTTTGGTACTGGATATGCTAGTTTAAGTTATTTACATCAGTTACCTATTAGTAA
ATTAAAGATTGATAAGTCATTTATAAAAAACATGCTAACCAACAAAAACGCCGCCATGATTACGAAAACTATTATTTTAT
TAGCAAAGGGGTTAGGCATCAAATCTCTTGCTGAGGGCGTTGAAACCAAAGAGCAATTTGATATCCTTAAGCAATTAGGT
TGTGATGAGATACAAGGGTATTATTTTAGCGAACCACTGCCGGTGGAGAAAATTGCTTTATTCTTGCAAGATGGCTCTAC
CCCAAATAAGGGGGCATTTTAA

Upstream 100 bases:

>100_bases
GTCGAGCCCTATTTTAATTTTCTACAAAATATACCAATTAACCAATTTCCTTGGTTAATTTCAAAATTAAAAAAAAAAGA
AAGTAGTGAATGTAAGTGAT

Downstream 100 bases:

>100_bases
TCAAGTTAGTATAGACTAACTCTTTGATTTGACGGTCAAAAGGAAGATTAAAATGCCCCAGAAAGATTGTATCCTAAATT
TACCAGGATATTCTATTAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MNKLPKWALAEKKEFKREKIQSLLIVPMEKENSLVGFMGFDIVTHKKQWLAEDIFMLSTVADIVIQSILKSYTIIEHESI
VRYFDPLTRLPNKELFVNYLQAVLSNIEQQENCFSFLILLNIDEFHIINDAYGTPFGDQLLFIIAEKLLHILPYKAKLCR
LEADRFLILLQGNKAEILKIADEILSMFNHVFKLNNHQVYLQARIGVTKIDNHSDNPEKLIQRASLAMRKARLDNIKIAI
FESNTEKSVNLKLNIQAELYQAITENQLVLHYQPQFCAKTKQIVALEALLRWMHPKKGLLYPSEFLDVLLCSDLLLPAGE
WVLKTVCAQNVAWIKQGLRPVSIAVNISEPQFRQPNFVPMLKKILTKTHMDPCLLKLEVTEQVMIDHLDETARKLHEIEA
HNIQIILDDFGTGYASLSYLHQLPISKLKIDKSFIKNMLTNKNAAMITKTIILLAKGLGIKSLAEGVETKEQFDILKQLG
CDEIQGYYFSEPLPVEKIALFLQDGSTPNKGAF

Sequences:

>Translated_513_residues
MNKLPKWALAEKKEFKREKIQSLLIVPMEKENSLVGFMGFDIVTHKKQWLAEDIFMLSTVADIVIQSILKSYTIIEHESI
VRYFDPLTRLPNKELFVNYLQAVLSNIEQQENCFSFLILLNIDEFHIINDAYGTPFGDQLLFIIAEKLLHILPYKAKLCR
LEADRFLILLQGNKAEILKIADEILSMFNHVFKLNNHQVYLQARIGVTKIDNHSDNPEKLIQRASLAMRKARLDNIKIAI
FESNTEKSVNLKLNIQAELYQAITENQLVLHYQPQFCAKTKQIVALEALLRWMHPKKGLLYPSEFLDVLLCSDLLLPAGE
WVLKTVCAQNVAWIKQGLRPVSIAVNISEPQFRQPNFVPMLKKILTKTHMDPCLLKLEVTEQVMIDHLDETARKLHEIEA
HNIQIILDDFGTGYASLSYLHQLPISKLKIDKSFIKNMLTNKNAAMITKTIILLAKGLGIKSLAEGVETKEQFDILKQLG
CDEIQGYYFSEPLPVEKIALFLQDGSTPNKGAF
>Mature_513_residues
MNKLPKWALAEKKEFKREKIQSLLIVPMEKENSLVGFMGFDIVTHKKQWLAEDIFMLSTVADIVIQSILKSYTIIEHESI
VRYFDPLTRLPNKELFVNYLQAVLSNIEQQENCFSFLILLNIDEFHIINDAYGTPFGDQLLFIIAEKLLHILPYKAKLCR
LEADRFLILLQGNKAEILKIADEILSMFNHVFKLNNHQVYLQARIGVTKIDNHSDNPEKLIQRASLAMRKARLDNIKIAI
FESNTEKSVNLKLNIQAELYQAITENQLVLHYQPQFCAKTKQIVALEALLRWMHPKKGLLYPSEFLDVLLCSDLLLPAGE
WVLKTVCAQNVAWIKQGLRPVSIAVNISEPQFRQPNFVPMLKKILTKTHMDPCLLKLEVTEQVMIDHLDETARKLHEIEA
HNIQIILDDFGTGYASLSYLHQLPISKLKIDKSFIKNMLTNKNAAMITKTIILLAKGLGIKSLAEGVETKEQFDILKQLG
CDEIQGYYFSEPLPVEKIALFLQDGSTPNKGAF

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=421, Percent_Identity=31.1163895486936, Blast_Score=217, Evalue=1e-57,
Organism=Escherichia coli, GI1787541, Length=446, Percent_Identity=29.5964125560538, Blast_Score=216, Evalue=4e-57,
Organism=Escherichia coli, GI226510982, Length=438, Percent_Identity=27.8538812785388, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1786507, Length=227, Percent_Identity=33.920704845815, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788502, Length=262, Percent_Identity=29.3893129770992, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=31.6872427983539, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081845, Length=326, Percent_Identity=29.7546012269939, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=29.3893129770992, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=33.6134453781513, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=25.1781472684086, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI1787055, Length=360, Percent_Identity=25, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788849, Length=244, Percent_Identity=30.327868852459, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1788381, Length=443, Percent_Identity=22.1218961625282, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788956, Length=151, Percent_Identity=31.1258278145695, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR000253
- InterPro:   IPR000014
- InterPro:   IPR008984 [H]

Pfam domain/function: PF00563 EAL; PF00498 FHA; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 58752; Mature: 58752

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLPKWALAEKKEFKREKIQSLLIVPMEKENSLVGFMGFDIVTHKKQWLAEDIFMLSTV
CCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
ADIVIQSILKSYTIIEHESIVRYFDPLTRLPNKELFVNYLQAVLSNIEQQENCFSFLILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
NIDEFHIINDAYGTPFGDQLLFIIAEKLLHILPYKAKLCRLEADRFLILLQGNKAEILKI
ECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEECCCEEEEEEECCHHHHHHH
ADEILSMFNHVFKLNNHQVYLQARIGVTKIDNHSDNPEKLIQRASLAMRKARLDNIKIAI
HHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
FESNTEKSVNLKLNIQAELYQAITENQLVLHYQPQFCAKTKQIVALEALLRWMHPKKGLL
EECCCCCEEEEEEEEHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
YPSEFLDVLLCSDLLLPAGEWVLKTVCAQNVAWIKQGLRPVSIAVNISEPQFRQPNFVPM
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHH
LKKILTKTHMDPCLLKLEVTEQVMIDHLDETARKLHEIEAHNIQIILDDFGTGYASLSYL
HHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
HQLPISKLKIDKSFIKNMLTNKNAAMITKTIILLAKGLGIKSLAEGVETKEQFDILKQLG
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC
CDEIQGYYFSEPLPVEKIALFLQDGSTPNKGAF
CHHHCCEECCCCCCHHHHHHHEECCCCCCCCCC
>Mature Secondary Structure
MNKLPKWALAEKKEFKREKIQSLLIVPMEKENSLVGFMGFDIVTHKKQWLAEDIFMLSTV
CCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
ADIVIQSILKSYTIIEHESIVRYFDPLTRLPNKELFVNYLQAVLSNIEQQENCFSFLILL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEE
NIDEFHIINDAYGTPFGDQLLFIIAEKLLHILPYKAKLCRLEADRFLILLQGNKAEILKI
ECCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHEECCCEEEEEEECCHHHHHHH
ADEILSMFNHVFKLNNHQVYLQARIGVTKIDNHSDNPEKLIQRASLAMRKARLDNIKIAI
HHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
FESNTEKSVNLKLNIQAELYQAITENQLVLHYQPQFCAKTKQIVALEALLRWMHPKKGLL
EECCCCCEEEEEEEEHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC
YPSEFLDVLLCSDLLLPAGEWVLKTVCAQNVAWIKQGLRPVSIAVNISEPQFRQPNFVPM
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHH
LKKILTKTHMDPCLLKLEVTEQVMIDHLDETARKLHEIEAHNIQIILDDFGTGYASLSYL
HHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH
HQLPISKLKIDKSFIKNMLTNKNAAMITKTIILLAKGLGIKSLAEGVETKEQFDILKQLG
HHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCC
CDEIQGYYFSEPLPVEKIALFLQDGSTPNKGAF
CHHHCCEECCCCCCHHHHHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]