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The map label for this gene is rhp8 [H]

Identifier: 148284914

GI number: 148284914

Start: 1637388

End: 1638968

Strand: Direct

Name: rhp8 [H]

Synonym: OTBS_1686

Alternate gene names: 148284914

Gene position: 1637388-1638968 (Clockwise)

Preceding gene: 148284912

Following gene: 148284915

Centisome position: 76.98

GC content: 29.66

Gene sequence:

>1581_bases
ATGTACCAATCTAATTTATCATTTCAAATATTTATGCATCACTTAGTAAGTGCATTACTGATTTTTTTTATAACAGTATT
TACCATATGTGTCGCTAAAAGTATAACTCCAGAAAAGTGTAAATATCCTCAGGCAGAGGATATATATGAAGAAGATGAAG
AAGATGAAGAAGATGAAGAAGATGAAGAAGAGATTGCAGATAATGATCTATTAAATGTTGTCAGTAATATGAATTTGGAC
ATATCTGATATGGGAGAAGCAAGAGAAGGATTAAGAAAAGATATAGCAGAAGTATCTAAGTTACTCTGTCTGCTAGAACA
AAGCACTGCTTCTTCTAAAAATTTAACAATGAGGTTACAACAGTCTGATATAAGAGAAACTGAGCAAAGTAACTATACAG
GATTGCTAATAACAGAAATAGAATCCATAAATAAAGAAAATAATGATCTGCAACAAACAAATAACCAACTAAAAATAAAA
TTACAGCAACTAGAAGTAAAGCTAGAGCAAGCGCTAGCAAGAAATACTGATTTGCGACAAATTTTACCAGAAACTCGAGC
TGAAATGGATAATCTACGGGAACAAAATGAACAACTAAAGATACAGCTACAGCAGCTACAAGTTAAGTTACAAAACTTAA
TGTCTTTGCAAAACAAAGACAGCAACTCAGTACTAATAAATCGTGCTAAATTAAACTATATCAGTGATGTTAAGTATATT
GCTTTAGCTAATATTGTTATTGTTAAAGCTTTAGCTGGGACTTTTACAGATAAATTGTCTAAAAGCAATAGGATAAAAAA
ACATTGTTATATTACCAGTTCTGGCTCAAATATTGATAAGTACTGGAATGTATGGGTTGAACCTTCCTTTATTAATACTT
ATCAACAAGAATATGGCAAAATTCAAAAATATAGCGCTATTGTTAATGGTATACTTGTTGGAGTCAATAAATATTTAAAC
GATAGGATTGCTATCGGTATTATTGCATCATATTTAAAGCTTGATGCAGAGTATGCTAGCAATGTATTAAGGAAAACAAA
ATGTAGAGTATACTCGCTATATTTAGGTAGTAGATATTATTTTCAGAAAAATCTATTTACACAGGGAATAATAGGGTTTG
CTAATTATGATGGCAAAAACAAATACCAGCATATATATAAACAACCTTCTGCTAAGATTGATAATATAAGTTATTATGGC
AATCTCATGATAGGGTATCATTTTACAAATCAACGACAGCTAAATTTAGAACCGTCGATTGGTATCAGTTGCATTTATTT
TGATATGAAAAGTTATAAGCCATCTAACGATAAAATTCTAGAAAGTATAATTGGTGCTACTATAAAATATCCGATTGTGT
ATAATATCAGTAATGCTACTGAGATAGTGACTGAGCTTTCTTGGTTCATTAATTATAACATATTAGATAATTATGATTAC
ATGTATAAAACTTATTATCAACTGGGAGCTAAAATAAATATTAACTATGATATGATAAGGTTAGCTGTTTCATATAATGC
TTACTTAACAGAAAAACATATTGCTCATGCTGGAACGATACATATAGGAACTAATTTTTAG

Upstream 100 bases:

>100_bases
GCTTTTTAATTAACATATTATGTGGGTTAACCTAAAATATTTGAATGAATTATAAATGCCAAATAATTAATAATTATACA
TATAACCTCTGATAGTAATT

Downstream 100 bases:

>100_bases
GTATCGCACTATAGCAATTAATTTTTGACTATTCAGTGTAACTACATAGTGACGCATCACAATATGAAAGAGCTAAACGC
CTAGGACTAAGTAAGTCTGA

Product: ompA-like, putative autotransporter

Products: NA

Alternate protein names: 168 kDa surface-layer protein; Cell surface antigen 5; Sca5; Surface protein antigen; rOmp B; rOmpB; 120 kDa outer membrane protein OmpB; Surface protein antigen; p120 [H]

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MYQSNLSFQIFMHHLVSALLIFFITVFTICVAKSITPEKCKYPQAEDIYEEDEEDEEDEEDEEEIADNDLLNVVSNMNLD
ISDMGEAREGLRKDIAEVSKLLCLLEQSTASSKNLTMRLQQSDIRETEQSNYTGLLITEIESINKENNDLQQTNNQLKIK
LQQLEVKLEQALARNTDLRQILPETRAEMDNLREQNEQLKIQLQQLQVKLQNLMSLQNKDSNSVLINRAKLNYISDVKYI
ALANIVIVKALAGTFTDKLSKSNRIKKHCYITSSGSNIDKYWNVWVEPSFINTYQQEYGKIQKYSAIVNGILVGVNKYLN
DRIAIGIIASYLKLDAEYASNVLRKTKCRVYSLYLGSRYYFQKNLFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYG
NLMIGYHFTNQRQLNLEPSIGISCIYFDMKSYKPSNDKILESIIGATIKYPIVYNISNATEIVTELSWFINYNILDNYDY
MYKTYYQLGAKININYDMIRLAVSYNAYLTEKHIAHAGTIHIGTNF

Sequences:

>Translated_526_residues
MYQSNLSFQIFMHHLVSALLIFFITVFTICVAKSITPEKCKYPQAEDIYEEDEEDEEDEEDEEEIADNDLLNVVSNMNLD
ISDMGEAREGLRKDIAEVSKLLCLLEQSTASSKNLTMRLQQSDIRETEQSNYTGLLITEIESINKENNDLQQTNNQLKIK
LQQLEVKLEQALARNTDLRQILPETRAEMDNLREQNEQLKIQLQQLQVKLQNLMSLQNKDSNSVLINRAKLNYISDVKYI
ALANIVIVKALAGTFTDKLSKSNRIKKHCYITSSGSNIDKYWNVWVEPSFINTYQQEYGKIQKYSAIVNGILVGVNKYLN
DRIAIGIIASYLKLDAEYASNVLRKTKCRVYSLYLGSRYYFQKNLFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYG
NLMIGYHFTNQRQLNLEPSIGISCIYFDMKSYKPSNDKILESIIGATIKYPIVYNISNATEIVTELSWFINYNILDNYDY
MYKTYYQLGAKININYDMIRLAVSYNAYLTEKHIAHAGTIHIGTNF
>Mature_526_residues
MYQSNLSFQIFMHHLVSALLIFFITVFTICVAKSITPEKCKYPQAEDIYEEDEEDEEDEEDEEEIADNDLLNVVSNMNLD
ISDMGEAREGLRKDIAEVSKLLCLLEQSTASSKNLTMRLQQSDIRETEQSNYTGLLITEIESINKENNDLQQTNNQLKIK
LQQLEVKLEQALARNTDLRQILPETRAEMDNLREQNEQLKIQLQQLQVKLQNLMSLQNKDSNSVLINRAKLNYISDVKYI
ALANIVIVKALAGTFTDKLSKSNRIKKHCYITSSGSNIDKYWNVWVEPSFINTYQQEYGKIQKYSAIVNGILVGVNKYLN
DRIAIGIIASYLKLDAEYASNVLRKTKCRVYSLYLGSRYYFQKNLFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYG
NLMIGYHFTNQRQLNLEPSIGISCIYFDMKSYKPSNDKILESIIGATIKYPIVYNISNATEIVTELSWFINYNILDNYDY
MYKTYYQLGAKININYDMIRLAVSYNAYLTEKHIAHAGTIHIGTNF

Specific function: The 32 kDa beta peptide may serve as a membrane anchor [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: 32 kDa beta peptide:Cell outer membrane; Multi-pass membrane protein (Potential). Note=The cleaved C- terminal fragment (autotransporter domain) is localized in the outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315
- InterPro:   IPR022095 [H]

Pfam domain/function: PF03797 Autotransporter; PF12334 rOmpB [H]

EC number: NA

Molecular weight: Translated: 60768; Mature: 60768

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYQSNLSFQIFMHHLVSALLIFFITVFTICVAKSITPEKCKYPQAEDIYEEDEEDEEDEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCC
DEEEIADNDLLNVVSNMNLDISDMGEAREGLRKDIAEVSKLLCLLEQSTASSKNLTMRLQ
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
QSDIRETEQSNYTGLLITEIESINKENNDLQQTNNQLKIKLQQLEVKLEQALARNTDLRQ
HHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHCCCHHHH
ILPETRAEMDNLREQNEQLKIQLQQLQVKLQNLMSLQNKDSNSVLINRAKLNYISDVKYI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHH
ALANIVIVKALAGTFTDKLSKSNRIKKHCYITSSGSNIDKYWNVWVEPSFINTYQQEYGK
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHEEEEECCHHHHHHHHHHHH
IQKYSAIVNGILVGVNKYLNDRIAIGIIASYLKLDAEYASNVLRKTKCRVYSLYLGSRYY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEE
FQKNLFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYGNLMIGYHFTNQRQLNLEPSI
EHHHHHHHCCEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCEEECCCCCC
GISCIYFDMKSYKPSNDKILESIIGATIKYPIVYNISNATEIVTELSWFINYNILDNYDY
CEEEEEEECCCCCCCCHHHHHHHHCCEEECCEEEECCCHHHHHHHHHHHEEEEEECCCHH
MYKTYYQLGAKININYDMIRLAVSYNAYLTEKHIAHAGTIHIGTNF
HHHHHHHCCCEEECCCEEEEEEEECCHHHHHHHHCCCCEEEECCCC
>Mature Secondary Structure
MYQSNLSFQIFMHHLVSALLIFFITVFTICVAKSITPEKCKYPQAEDIYEEDEEDEEDEE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHCCCCCCCCCCC
DEEEIADNDLLNVVSNMNLDISDMGEAREGLRKDIAEVSKLLCLLEQSTASSKNLTMRLQ
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
QSDIRETEQSNYTGLLITEIESINKENNDLQQTNNQLKIKLQQLEVKLEQALARNTDLRQ
HHHHHHHHCCCCCEEEEEEHHHCCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHCCCHHHH
ILPETRAEMDNLREQNEQLKIQLQQLQVKLQNLMSLQNKDSNSVLINRAKLNYISDVKYI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHH
ALANIVIVKALAGTFTDKLSKSNRIKKHCYITSSGSNIDKYWNVWVEPSFINTYQQEYGK
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHEEEEECCHHHHHHHHHHHH
IQKYSAIVNGILVGVNKYLNDRIAIGIIASYLKLDAEYASNVLRKTKCRVYSLYLGSRYY
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEE
FQKNLFTQGIIGFANYDGKNKYQHIYKQPSAKIDNISYYGNLMIGYHFTNQRQLNLEPSI
EHHHHHHHCCEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCCEEECCCCCC
GISCIYFDMKSYKPSNDKILESIIGATIKYPIVYNISNATEIVTELSWFINYNILDNYDY
CEEEEEEECCCCCCCCHHHHHHHHCCEEECCEEEECCCHHHHHHHHHHHEEEEEECCCHH
MYKTYYQLGAKININYDMIRLAVSYNAYLTEKHIAHAGTIHIGTNF
HHHHHHHCCCEEECCCEEEEEEEECCHHHHHHHHCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA