Click here to switch to the map view.

The map label for this gene is rbfA [H]

Identifier: 148284848

GI number: 148284848

Start: 1535695

End: 1536057

Strand: Direct

Name: rbfA [H]

Synonym: OTBS_1569

Alternate gene names: 148284848

Gene position: 1535695-1536057 (Clockwise)

Preceding gene: 148284847

Following gene: 148284850

Centisome position: 72.2

GC content: 28.65

Gene sequence:

>363_bases
ATGAAGAAAATATATCAAGCAAAATCATATAAGACTTTAAGAACTGCTAATATGATAAGACTAGCTTTAATTGATGTTCT
ACACTCAAATAAACTGCATACAGATTTATTTGAGTGCAAGATAACTGTCACAAAAGTGCTAGCACAAGCCGGTCAAGGAA
TGTATCACTGCTACATTTTACCATTTAGCAATTCAAAACTATCTCAAGATAAACTTATGCATGCTATTAATGATTCTCTT
CCTATAATTAGGAGAATGATTACGCAAAAAATCAATTTAAAATACTCGCCAGAATTAAGAATTTTCTATGATTATGGATT
TGATAATGCTGCAAATGTAGATAAAATTTTAAAATCATTATGA

Upstream 100 bases:

>100_bases
TTATTATGATATCAATGTGGGAGATATAATTGAAGCATTTATAGTAACAGAAGAAAAAGCTAAACTTTAACTTATTGACT
AATGCTAATAGTGAATTGTT

Downstream 100 bases:

>100_bases
TAATAGACCTCGTTCGAAACTGGTTAAGGTAGATCAAAATTATAAATGCCAGAGATCAAATTAAATCTATATGAGTAGAC
CTAACCAATCGCTCAATTAG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYILPFSNSKLSQDKLMHAINDSL
PIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL

Sequences:

>Translated_120_residues
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYILPFSNSKLSQDKLMHAINDSL
PIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL
>Mature_120_residues
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYILPFSNSKLSQDKLMHAINDSL
PIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13897; Mature: 13897

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYIL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
PFSNSKLSQDKLMHAINDSLPIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL
EECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCHHHHHHCC
>Mature Secondary Structure
MKKIYQAKSYKTLRTANMIRLALIDVLHSNKLHTDLFECKITVTKVLAQAGQGMYHCYIL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE
PFSNSKLSQDKLMHAINDSLPIIRRMITQKINLKYSPELRIFYDYGFDNAANVDKILKSL
EECCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEECCCEEEEEEECCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA