| Definition | Orientia tsutsugamushi Boryong, complete genome. |
|---|---|
| Accession | NC_009488 |
| Length | 2,127,051 |
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The map label for this gene is glyS [H]
Identifier: 148284356
GI number: 148284356
Start: 582517
End: 584568
Strand: Direct
Name: glyS [H]
Synonym: OTBS_0604
Alternate gene names: 148284356
Gene position: 582517-584568 (Clockwise)
Preceding gene: 148284355
Following gene: 148284357
Centisome position: 27.39
GC content: 30.07
Gene sequence:
>2052_bases ATGCATAGTTACAGTTTAATATTAGAACTCTACTCTGAGGAAATTCCAGCTAAAATGCAAAAAAAAGCTGAATTAGCATT TCAAGAAATTTTTACTAAAAATTTCAAATTAGCTAATATTAGTTTTAATCACTTAAAAGTATATATAGGCCCATGCAGAG TGGTTCTACATACAGTCTTTAGCAGCAAAGAACTAGCCGCTAAAGCAATTGAACATAAAGGCCCTAAAGTCGGAGCAAAA AAATCAGCTGTTGAAGGATTTTGCAAAGCTAAGTCTATTTTAAGCAAGGACTTAACCATAAAAACATTTAATAATCAGCA GTTCTACGTTTATACTCATGTTACTCCAACTCAACCTATTAAAGATCTATTACCAGAAATCATATTAAATTCCATTAAAG AATACACTTGGCCAAAATCAATGAAATGGGGGAATTATCAGATTAATTGGGTTAGACCACTTAGAAACATTTTATGCATG TTCAATGGCGAAGAATTAAAAATCAGCTGGCATCATCTAACATCAAATAATAAAAGCTTTGGGCATAAATTCATGAGTCC AAATAGCTTTACCGTAAGCACATGGAAAGATTATACTAATAATTTAAGAGATAATTTTGTCATATTAGACAGATCAGAAC GACAAGCTATTATACTTAATTCCTTAGAAAAAACATGCCAAACTCTAGGCATCACCTTAAATTACAATAATAAATTACTT GATGAAGTTACTGGTTTAGTTGAATACCCTATCGTATTATATGGCACAATACCTAATGAGTTTCTTAGCTTACCAGAAGA AATCATCATCACTTCTGTACAAACTCATCAAAAATATTTCACTACAAAAGATCATAGCAATAAACTAGCTCCATATTTTT TATTTGTTACCAATATCAATACTGAAGATTACAGCAATATTATCAAAGGAAATGAAAAAGTCTTATCATCTCGTCTAACT GATGCTATATACTTTTTTAATCAAGACTGTCAACTTACATTGCTTAGTAAATTAGAAAAATTAAAAAAAGTAGTCTTTCA CACTAAAATTGGTAGTATATTTGATAAAGTTCAGAGAATAAAAAAAATATGCCATAAGCTTGCACCTGATGATCAAGAAC TAGCTATTGCAGCTGAACTGTGTAAATCAGATTTAGTCTCAGAAGTGGTACAAGAATTCCCTAATCTACAAGGAATAATG GGAAAATACTATGCTTTAAATGACAAACTCAGCCCTGCAGTCGCTAATATAATCGGCAACCACTACTATCCTACCAGAAT TGAAGATGAAGTACCTAATGGTAAGGCAGCAATTCTTGCTTTAGCTGACAAGCTTGATAATTTAACTAGCCTATATTTAG CAGGAGAGCGCGCTACTAGTTCAAAAGATCCATTTGCATTACGTAGATGCGCTTTTTCTATCGCTAGAATAATTTTAACT AATAAAATACAAGTAAAATTATTAGATTTATTAACTTTCATTTATCAACTTCATGATATTTATACTAATGAGCTAGCAAC CGAAGTACTACTATTCATAAAAGATAAAACAAAAAATTTACTTAATGCAAAATTTAATCATTTGTTAGTCGAAGCTATAT TTCAGCAAAACAACTATGATGATCTTACTGAGTTAGAATTAAGAATGAATATTCTTGATCATTTTTTAACCTCAACTAAA GGTCAAAACTTTATACAATCATATAAAAGAGCGTATAATATCATTAAAGATGAAGAAATTCGTCAAGCAAAAATAGATGG TTACAAATTATTAACTAAACAAGAAACCATCCTATATCAGCAAGCTATGAATTCAAAAGTTAGCCAATTATCTACTCAAT TCTCAGCTGAAAGTTTTACTTTAGCTCTTGATCAATTATCAAATCTTAGCATACAAATTGCAGAATTTTTAGACAATGTC ACTGTTAACACTACTGATCAGTATCTTACTGATACTCGCAAGCTTATATTACAATATGTAGTACAGTTTTGCAATAATAT AGCACCATTTGACAAAGTAATAAAACATTATGTTAGCAAATATGAACAGTAA
Upstream 100 bases:
>100_bases GGAGTAATCGGAGTTACTCAACGCACTAATTATATCGCTAGAATACGAACACTAGCTCAAACAGTATGTAATCAATATAT AAAAAATCTTAATATATCAA
Downstream 100 bases:
>100_bases TAATAATGATATAAATGTTGCTGCACAATTTATTGAACAAGGGAAATTAGTTATATTCCCTACTGAAACAGTGTATGGCA TAGGAGCTGATGCAACTAAT
Product: glycyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 683; Mature: 683
Protein sequence:
>683_residues MHSYSLILELYSEEIPAKMQKKAELAFQEIFTKNFKLANISFNHLKVYIGPCRVVLHTVFSSKELAAKAIEHKGPKVGAK KSAVEGFCKAKSILSKDLTIKTFNNQQFYVYTHVTPTQPIKDLLPEIILNSIKEYTWPKSMKWGNYQINWVRPLRNILCM FNGEELKISWHHLTSNNKSFGHKFMSPNSFTVSTWKDYTNNLRDNFVILDRSERQAIILNSLEKTCQTLGITLNYNNKLL DEVTGLVEYPIVLYGTIPNEFLSLPEEIIITSVQTHQKYFTTKDHSNKLAPYFLFVTNINTEDYSNIIKGNEKVLSSRLT DAIYFFNQDCQLTLLSKLEKLKKVVFHTKIGSIFDKVQRIKKICHKLAPDDQELAIAAELCKSDLVSEVVQEFPNLQGIM GKYYALNDKLSPAVANIIGNHYYPTRIEDEVPNGKAAILALADKLDNLTSLYLAGERATSSKDPFALRRCAFSIARIILT NKIQVKLLDLLTFIYQLHDIYTNELATEVLLFIKDKTKNLLNAKFNHLLVEAIFQQNNYDDLTELELRMNILDHFLTSTK GQNFIQSYKRAYNIIKDEEIRQAKIDGYKLLTKQETILYQQAMNSKVSQLSTQFSAESFTLALDQLSNLSIQIAEFLDNV TVNTTDQYLTDTRKLILQYVVQFCNNIAPFDKVIKHYVSKYEQ
Sequences:
>Translated_683_residues MHSYSLILELYSEEIPAKMQKKAELAFQEIFTKNFKLANISFNHLKVYIGPCRVVLHTVFSSKELAAKAIEHKGPKVGAK KSAVEGFCKAKSILSKDLTIKTFNNQQFYVYTHVTPTQPIKDLLPEIILNSIKEYTWPKSMKWGNYQINWVRPLRNILCM FNGEELKISWHHLTSNNKSFGHKFMSPNSFTVSTWKDYTNNLRDNFVILDRSERQAIILNSLEKTCQTLGITLNYNNKLL DEVTGLVEYPIVLYGTIPNEFLSLPEEIIITSVQTHQKYFTTKDHSNKLAPYFLFVTNINTEDYSNIIKGNEKVLSSRLT DAIYFFNQDCQLTLLSKLEKLKKVVFHTKIGSIFDKVQRIKKICHKLAPDDQELAIAAELCKSDLVSEVVQEFPNLQGIM GKYYALNDKLSPAVANIIGNHYYPTRIEDEVPNGKAAILALADKLDNLTSLYLAGERATSSKDPFALRRCAFSIARIILT NKIQVKLLDLLTFIYQLHDIYTNELATEVLLFIKDKTKNLLNAKFNHLLVEAIFQQNNYDDLTELELRMNILDHFLTSTK GQNFIQSYKRAYNIIKDEEIRQAKIDGYKLLTKQETILYQQAMNSKVSQLSTQFSAESFTLALDQLSNLSIQIAEFLDNV TVNTTDQYLTDTRKLILQYVVQFCNNIAPFDKVIKHYVSKYEQ >Mature_683_residues MHSYSLILELYSEEIPAKMQKKAELAFQEIFTKNFKLANISFNHLKVYIGPCRVVLHTVFSSKELAAKAIEHKGPKVGAK KSAVEGFCKAKSILSKDLTIKTFNNQQFYVYTHVTPTQPIKDLLPEIILNSIKEYTWPKSMKWGNYQINWVRPLRNILCM FNGEELKISWHHLTSNNKSFGHKFMSPNSFTVSTWKDYTNNLRDNFVILDRSERQAIILNSLEKTCQTLGITLNYNNKLL DEVTGLVEYPIVLYGTIPNEFLSLPEEIIITSVQTHQKYFTTKDHSNKLAPYFLFVTNINTEDYSNIIKGNEKVLSSRLT DAIYFFNQDCQLTLLSKLEKLKKVVFHTKIGSIFDKVQRIKKICHKLAPDDQELAIAAELCKSDLVSEVVQEFPNLQGIM GKYYALNDKLSPAVANIIGNHYYPTRIEDEVPNGKAAILALADKLDNLTSLYLAGERATSSKDPFALRRCAFSIARIILT NKIQVKLLDLLTFIYQLHDIYTNELATEVLLFIKDKTKNLLNAKFNHLLVEAIFQQNNYDDLTELELRMNILDHFLTSTK GQNFIQSYKRAYNIIKDEEIRQAKIDGYKLLTKQETILYQQAMNSKVSQLSTQFSAESFTLALDQLSNLSIQIAEFLDNV TVNTTDQYLTDTRKLILQYVVQFCNNIAPFDKVIKHYVSKYEQ
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=695, Percent_Identity=27.9136690647482, Blast_Score=288, Evalue=1e-78,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008909 - InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF05746 DALR_1; PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 78587; Mature: 78587
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSYSLILELYSEEIPAKMQKKAELAFQEIFTKNFKLANISFNHLKVYIGPCRVVLHTVF CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECEEEEEEHHHHHHHHHHH SSKELAAKAIEHKGPKVGAKKSAVEGFCKAKSILSKDLTIKTFNNQQFYVYTHVTPTQPI CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCHH KDLLPEIILNSIKEYTWPKSMKWGNYQINWVRPLRNILCMFNGEELKISWHHLTSNNKSF HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEEEEEECCCCCCC GHKFMSPNSFTVSTWKDYTNNLRDNFVILDRSERQAIILNSLEKTCQTLGITLNYNNKLL CCCCCCCCCEEEEEHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCCHHH DEVTGLVEYPIVLYGTIPNEFLSLPEEIIITSVQTHQKYFTTKDHSNKLAPYFLFVTNIN HHHHHHHHCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECC TEDYSNIIKGNEKVLSSRLTDAIYFFNQDCQLTLLSKLEKLKKVVFHTKIGSIFDKVQRI CHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKICHKLAPDDQELAIAAELCKSDLVSEVVQEFPNLQGIMGKYYALNDKLSPAVANIIGN HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCHHHHHHHCC HYYPTRIEDEVPNGKAAILALADKLDNLTSLYLAGERATSSKDPFALRRCAFSIARIILT CCCCCCCCCCCCCCCEEHHHHHHHHCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHC NKIQVKLLDLLTFIYQLHDIYTNELATEVLLFIKDKTKNLLNAKFNHLLVEAIFQQNNYD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DLTELELRMNILDHFLTSTKGQNFIQSYKRAYNIIKDEEIRQAKIDGYKLLTKQETILYQ CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEHHHHHHHHH QAMNSKVSQLSTQFSAESFTLALDQLSNLSIQIAEFLDNVTVNTTDQYLTDTRKLILQYV HHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH VQFCNNIAPFDKVIKHYVSKYEQ HHHHCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MHSYSLILELYSEEIPAKMQKKAELAFQEIFTKNFKLANISFNHLKVYIGPCRVVLHTVF CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECEEEEEEHHHHHHHHHHH SSKELAAKAIEHKGPKVGAKKSAVEGFCKAKSILSKDLTIKTFNNQQFYVYTHVTPTQPI CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCCHH KDLLPEIILNSIKEYTWPKSMKWGNYQINWVRPLRNILCMFNGEELKISWHHLTSNNKSF HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHHCCCCEEEEEEEEECCCCCCC GHKFMSPNSFTVSTWKDYTNNLRDNFVILDRSERQAIILNSLEKTCQTLGITLNYNNKLL CCCCCCCCCEEEEEHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCCHHH DEVTGLVEYPIVLYGTIPNEFLSLPEEIIITSVQTHQKYFTTKDHSNKLAPYFLFVTNIN HHHHHHHHCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECC TEDYSNIIKGNEKVLSSRLTDAIYFFNQDCQLTLLSKLEKLKKVVFHTKIGSIFDKVQRI CHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKICHKLAPDDQELAIAAELCKSDLVSEVVQEFPNLQGIMGKYYALNDKLSPAVANIIGN HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEECCCCCHHHHHHHCC HYYPTRIEDEVPNGKAAILALADKLDNLTSLYLAGERATSSKDPFALRRCAFSIARIILT CCCCCCCCCCCCCCCEEHHHHHHHHCCHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHC NKIQVKLLDLLTFIYQLHDIYTNELATEVLLFIKDKTKNLLNAKFNHLLVEAIFQQNNYD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DLTELELRMNILDHFLTSTKGQNFIQSYKRAYNIIKDEEIRQAKIDGYKLLTKQETILYQ CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCEEEEHHHHHHHHH QAMNSKVSQLSTQFSAESFTLALDQLSNLSIQIAEFLDNVTVNTTDQYLTDTRKLILQYV HHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH VQFCNNIAPFDKVIKHYVSKYEQ HHHHCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA