Click here to switch to the map view.

The map label for this gene is smpA

Identifier: 148284267

GI number: 148284267

Start: 427755

End: 428120

Strand: Direct

Name: smpA

Synonym: OTBS_0452

Alternate gene names: NA

Gene position: 427755-428120 (Clockwise)

Preceding gene: 148284265

Following gene: 148284273

Centisome position: 20.11

GC content: 26.78

Gene sequence:

>366_bases
ATGCGATATAATATGGTTTACTTTAGAGTTTTTATTAAGAGAATATTTTTATTATTGAGTCTATTATTAATATTAAGTGC
TAGTACTATTGACTATCATGGTAAGTACATTCGAGATGAGCAGATAGAACAGTTACAAGAAAAATTACTACGCCAAGATG
TTAGTTTGTCTAAGCTTGATGTTATTAATTTAATAGGCGCTCCTTCTTTTATATCAGCAGACAATTTAAATATCTGGTAT
TACATCCATTATACCACCAAAGTAAATAATCTTTGGTTTAATAAATTACTGGCTCAAAGAATTGTTATACTAACTTTTAA
TGCTGATAATGACAAATTAATGCGTATATTAGTTTTTGATAACTAA

Upstream 100 bases:

>100_bases
CCATATATGTCCTCGATAAAATTTTATAATTTGTAATTTTTATATATTAAATTAGAACATAATATATTATATTTTATCAA
TGAAATCCAGCTAATTAATA

Downstream 100 bases:

>100_bases
TCTTGCTATAATAAAATATACATAGAGAAGTGTGACAATAAATCAAAAGAAATAAAGAGTTCAAAATCAATGCAGATACA
TTATATTTAGAAAATAAAGT

Product: putative outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MRYNMVYFRVFIKRIFLLLSLLLILSASTIDYHGKYIRDEQIEQLQEKLLRQDVSLSKLDVINLIGAPSFISADNLNIWY
YIHYTTKVNNLWFNKLLAQRIVILTFNADNDKLMRILVFDN

Sequences:

>Translated_121_residues
MRYNMVYFRVFIKRIFLLLSLLLILSASTIDYHGKYIRDEQIEQLQEKLLRQDVSLSKLDVINLIGAPSFISADNLNIWY
YIHYTTKVNNLWFNKLLAQRIVILTFNADNDKLMRILVFDN
>Mature_121_residues
MRYNMVYFRVFIKRIFLLLSLLLILSASTIDYHGKYIRDEQIEQLQEKLLRQDVSLSKLDVINLIGAPSFISADNLNIWY
YIHYTTKVNNLWFNKLLAQRIVILTFNADNDKLMRILVFDN

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14433; Mature: 14433

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYNMVYFRVFIKRIFLLLSLLLILSASTIDYHGKYIRDEQIEQLQEKLLRQDVSLSKLD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
VINLIGAPSFISADNLNIWYYIHYTTKVNNLWFNKLLAQRIVILTFNADNDKLMRILVFD
HHHHCCCCCEECCCCCEEEEEEEEEEEECHHHHHHHHHCEEEEEEEECCCCCEEEEEEEC
N
C
>Mature Secondary Structure
MRYNMVYFRVFIKRIFLLLSLLLILSASTIDYHGKYIRDEQIEQLQEKLLRQDVSLSKLD
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
VINLIGAPSFISADNLNIWYYIHYTTKVNNLWFNKLLAQRIVILTFNADNDKLMRILVFD
HHHHCCCCCEECCCCCEEEEEEEEEEEECHHHHHHHHHCEEEEEEEECCCCCEEEEEEEC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA