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The map label for this gene is ybjR [H]

Identifier: 148284023

GI number: 148284023

Start: 49164

End: 50264

Strand: Direct

Name: ybjR [H]

Synonym: OTBS_0048

Alternate gene names: 148284023

Gene position: 49164-50264 (Clockwise)

Preceding gene: 148284019

Following gene: 148284024

Centisome position: 2.31

GC content: 32.43

Gene sequence:

>1101_bases
ATGCTTTATTTGCCACTATTGCAACTATTACAACATGTTATTGTTGATAATGCGTTAGTAGTTAATAAGTCCAATATTCC
TCAGAAAAGTCAATTACCGACTACAATATCAAGCCAGCATCATAAAAAAATACAGCATACTCCTATAGAACAAGTAAATG
TTTTTAAACATGCGTTTCCTTCAGATAAAAATACTGGCATTTATGTTTCTCAATTTTCTGATTATGGAATTACAGGGTAT
GCAATAGATGAATTTCCTGAAAATGAAGATAACCGCAACCATTATACTCAGCGAAATCAAGATACTTCTATAAAGTACCT
AATTATGCATTACACAGTATGCAATTTTTCAAGTACAGCGCAAGAGTTTACTGTTAACAAACCTTTATTAGGTCAAGTTA
GCTCTCATATAGTAATTACTGAAGCAGAGGAAGGAAAAACACCAGCAGGAATTTTAATATCTTTTGTTCCAGAAAACAAA
ATTGCTTATCATGCAGGAGTTAGTGCCTGGCAAAACGATACAAACTTGAATAGCATGTCAATAGGAATTGAGCATGTTAA
CAGAGGATTTAATACAGTAAATGCAAAAAAGGAGTGGGTTTGCTATGATAAACATCAAATAGCAACTTCAGGTATAGTTA
GTTCTGGAATAATAAGGCGATATAACATAAAGCCTATTCATGTTTTAGGTCACTCAGATATCGCATATAATCGAAAGAGT
GATCCTGGCCCTTTATTCCCATGGGGACAATTATATCATGAGTATAATGTTGGAGCATGGTTAACTGATGCAGAACTAAA
CTCTCAATATATTAAAGAAAAATATAATCCTAAGATCTCTGATCCAGATAAAATAGATGATATTACTTTTTTAAAATTGC
TACAAGAATATGGATATCACATTCCAGACAACGTTGATTTAAATAAAACAGATAATCCAAAGCAAACTGTTGCACTTTGT
GCTCCACTAATATTAGCTTTTAAGGCCCATTTTTCAGCTAATCAACATCCTGAACTTTGCGATAATGCTCAAATTACATC
TACTGATAAATATTGGATTTGGGCGTTGACTGCAAAATATCAAAGTCAGATAAATCAATAA

Upstream 100 bases:

>100_bases
AAACTTTCAACTTTAACCAAGTGCTATACTGATTGCAAGCTTATAGTTAACAATGCTATACTCAGTTTATTATACCTGTT
CAACAATTATTAAATAAAAC

Downstream 100 bases:

>100_bases
TATTATGCTTAATAAAATTCTTAAATAAACACGAGTTTGAATGTAAGAAATAATATAAGACATAAGTAGAATAAGTATTA
CAACACCAGAACATGCTAAG

Product: N-acetylmuramoyl-L-alanine amidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MLYLPLLQLLQHVIVDNALVVNKSNIPQKSQLPTTISSQHHKKIQHTPIEQVNVFKHAFPSDKNTGIYVSQFSDYGITGY
AIDEFPENEDNRNHYTQRNQDTSIKYLIMHYTVCNFSSTAQEFTVNKPLLGQVSSHIVITEAEEGKTPAGILISFVPENK
IAYHAGVSAWQNDTNLNSMSIGIEHVNRGFNTVNAKKEWVCYDKHQIATSGIVSSGIIRRYNIKPIHVLGHSDIAYNRKS
DPGPLFPWGQLYHEYNVGAWLTDAELNSQYIKEKYNPKISDPDKIDDITFLKLLQEYGYHIPDNVDLNKTDNPKQTVALC
APLILAFKAHFSANQHPELCDNAQITSTDKYWIWALTAKYQSQINQ

Sequences:

>Translated_366_residues
MLYLPLLQLLQHVIVDNALVVNKSNIPQKSQLPTTISSQHHKKIQHTPIEQVNVFKHAFPSDKNTGIYVSQFSDYGITGY
AIDEFPENEDNRNHYTQRNQDTSIKYLIMHYTVCNFSSTAQEFTVNKPLLGQVSSHIVITEAEEGKTPAGILISFVPENK
IAYHAGVSAWQNDTNLNSMSIGIEHVNRGFNTVNAKKEWVCYDKHQIATSGIVSSGIIRRYNIKPIHVLGHSDIAYNRKS
DPGPLFPWGQLYHEYNVGAWLTDAELNSQYIKEKYNPKISDPDKIDDITFLKLLQEYGYHIPDNVDLNKTDNPKQTVALC
APLILAFKAHFSANQHPELCDNAQITSTDKYWIWALTAKYQSQINQ
>Mature_366_residues
MLYLPLLQLLQHVIVDNALVVNKSNIPQKSQLPTTISSQHHKKIQHTPIEQVNVFKHAFPSDKNTGIYVSQFSDYGITGY
AIDEFPENEDNRNHYTQRNQDTSIKYLIMHYTVCNFSSTAQEFTVNKPLLGQVSSHIVITEAEEGKTPAGILISFVPENK
IAYHAGVSAWQNDTNLNSMSIGIEHVNRGFNTVNAKKEWVCYDKHQIATSGIVSSGIIRRYNIKPIHVLGHSDIAYNRKS
DPGPLFPWGQLYHEYNVGAWLTDAELNSQYIKEKYNPKISDPDKIDDITFLKLLQEYGYHIPDNVDLNKTDNPKQTVALC
APLILAFKAHFSANQHPELCDNAQITSTDKYWIWALTAKYQSQINQ

Specific function: Unknown

COG id: COG3023

COG function: function code V; Negative regulator of beta-lactamase expression

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787092, Length=230, Percent_Identity=36.0869565217391, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002502
- InterPro:   IPR002477 [H]

Pfam domain/function: PF01510 Amidase_2 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 41586; Mature: 41586

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYLPLLQLLQHVIVDNALVVNKSNIPQKSQLPTTISSQHHKKIQHTPIEQVNVFKHAFP
CCCHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
SDKNTGIYVSQFSDYGITGYAIDEFPENEDNRNHYTQRNQDTSIKYLIMHYTVCNFSSTA
CCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCH
QEFTVNKPLLGQVSSHIVITEAEEGKTPAGILISFVPENKIAYHAGVSAWQNDTNLNSMS
HHHCCCCCHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCCHHHCCCCCCCCEE
IGIEHVNRGFNTVNAKKEWVCYDKHQIATSGIVSSGIIRRYNIKPIHVLGHSDIAYNRKS
EEHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHCCEEEECCCEEEEECCCCEEECCCC
DPGPLFPWGQLYHEYNVGAWLTDAELNSQYIKEKYNPKISDPDKIDDITFLKLLQEYGYH
CCCCCCCHHHHHEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
IPDNVDLNKTDNPKQTVALCAPLILAFKAHFSANQHPELCDNAQITSTDKYWIWALTAKY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEHHH
QSQINQ
HHHCCC
>Mature Secondary Structure
MLYLPLLQLLQHVIVDNALVVNKSNIPQKSQLPTTISSQHHKKIQHTPIEQVNVFKHAFP
CCCHHHHHHHHHHHHCCEEEEECCCCCCHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC
SDKNTGIYVSQFSDYGITGYAIDEFPENEDNRNHYTQRNQDTSIKYLIMHYTVCNFSSTA
CCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCH
QEFTVNKPLLGQVSSHIVITEAEEGKTPAGILISFVPENKIAYHAGVSAWQNDTNLNSMS
HHHCCCCCHHHCCCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCCHHHCCCCCCCCEE
IGIEHVNRGFNTVNAKKEWVCYDKHQIATSGIVSSGIIRRYNIKPIHVLGHSDIAYNRKS
EEHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHCCEEEECCCEEEEECCCCEEECCCC
DPGPLFPWGQLYHEYNVGAWLTDAELNSQYIKEKYNPKISDPDKIDDITFLKLLQEYGYH
CCCCCCCHHHHHEECCCCEEEECCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC
IPDNVDLNKTDNPKQTVALCAPLILAFKAHFSANQHPELCDNAQITSTDKYWIWALTAKY
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEEEEEHHH
QSQINQ
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]