Click here to switch to the map view.

The map label for this gene is arcB [H]

Identifier: 148269067

GI number: 148269067

Start: 2816501

End: 2817511

Strand: Reverse

Name: arcB [H]

Synonym: SaurJH9_2658

Alternate gene names: 148269067

Gene position: 2817511-2816501 (Counterclockwise)

Preceding gene: 148269068

Following gene: 148269066

Centisome position: 96.93

GC content: 33.14

Gene sequence:

>1011_bases
ATGACAGAAATTCAAAAACCGTATGATTTAAAAGGCAGATCATTATTAAAAGAAAGTGATTTTACCAAAGCAGAATTCGA
AGGACTTATTGATTTTGCAATTACATTAAAAGAGTATAAGAAAAACGGTATTAAGCATCACTACTTATCTGGAAAAAATA
TTGCACTACTATTCGAAAAGAATTCGACGAGAACGCGTGCAGCGTTTACAGTTGCGTCTATTGATTTAGGTGCGCATCCA
GAATTTTTAGGGAAAAATGATATTCAATTAGGCAAAAAAGAATCTGTAGAGGATACTGCGAAAGTATTAGGTAGAATGTT
CGATGGTATTGAATTCCGTGGTTTTTCACAACAAGCTGTTGAAGATTTAGCGAAGTTCTCTGGTGTACCGGTGTGGAATG
GATTAACAGACGATTGGCATCCTACACAAATGTTAGCTGATTTTATGACAATAAAAGAGAATTTTGGATATCTAGAAGGA
ATAAACTTAACTTACGTTGGAGATGGACGTAATAATATTGCGCATTCATTAATGGTAGCAGGTGCTATGTTAGGTGTTAA
TGTAAGAATTTGTACACCTAAATCATTAAATCCAAAAGAGGCATATGTTGATATTGCAAAAGAAAAAGCGAGTCAATATG
GTGGTTCAATCATGATTACGGATAATATTGCAGAAGCAGTTGAAAATACAGATGCTATATATACAGATGTTTGGGTATCG
ATGGGTGAAGAAAGTGAATTTGAACAACGTATTAATTTATTAAAAGACTATCAAGTGAATCAACAGATGTTTGATTTAAC
AGGTAAAGATTCAACGATATTCTTACATTGTTTACCAGCATTCCATGATACAAATACACTTTATGGACAAGAAATTTATG
AAAAATATGGATTAGCTGAAATGGAAGTTACAGACCAAATCTTTAGAAGTGAACATTCAAAAGTGTTTGATCAAGCTGAA
AATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAA

Upstream 100 bases:

>100_bases
GCGAGCTGGTACGTGGACGTGGGGGCCCTAGATGTATGAGTCAACCACTATTCAGAGAAGACATTTAACGTAATAAATTA
TAGAAGCGAGGGTGAAAATA

Downstream 100 bases:

>100_bases
TCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATTGGTATTAAAGG
AGAAATGAATATGAACGAAT

Product: ornithine carbamoyltransferase

Products: NA

Alternate protein names: OTCase [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEKNSTRTRAAFTVASIDLGAHP
EFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAVEDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEG
INLTYVGDGRNNIAHSLMVAGAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSIMITDNIAEAVENTDAIYTDVWVS
MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAEMEVTDQIFRSEHSKVFDQAE
NRMHTIKAVMAATLGS

Sequences:

>Translated_336_residues
MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEKNSTRTRAAFTVASIDLGAHP
EFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAVEDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEG
INLTYVGDGRNNIAHSLMVAGAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSIMITDNIAEAVENTDAIYTDVWVS
MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAEMEVTDQIFRSEHSKVFDQAE
NRMHTIKAVMAATLGS
>Mature_335_residues
TEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEKNSTRTRAAFTVASIDLGAHPE
FLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAVEDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGI
NLTYVGDGRNNIAHSLMVAGAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSIMITDNIAEAVENTDAIYTDVWVSM
GEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAEMEVTDQIFRSEHSKVFDQAEN
RMHTIKAVMAATLGS

Specific function: Arginine biosynthesis; sixth step. [C]

COG id: COG0078

COG function: function code E; Ornithine carbamoyltransferase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATCase/OTCase family [H]

Homologues:

Organism=Homo sapiens, GI38788445, Length=332, Percent_Identity=37.3493975903614, Blast_Score=227, Evalue=1e-59,
Organism=Homo sapiens, GI18105007, Length=340, Percent_Identity=26.7647058823529, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1786469, Length=331, Percent_Identity=51.963746223565, Blast_Score=347, Evalue=8e-97,
Organism=Escherichia coli, GI1790703, Length=326, Percent_Identity=51.840490797546, Blast_Score=345, Evalue=2e-96,
Organism=Escherichia coli, GI48994908, Length=346, Percent_Identity=26.3005780346821, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI2367364, Length=335, Percent_Identity=27.7611940298507, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204318, Length=179, Percent_Identity=30.7262569832402, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322373, Length=335, Percent_Identity=34.3283582089552, Blast_Score=177, Evalue=2e-45,
Organism=Saccharomyces cerevisiae, GI6322331, Length=279, Percent_Identity=26.1648745519713, Blast_Score=81, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24642586, Length=338, Percent_Identity=27.2189349112426, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006132
- InterPro:   IPR006130
- InterPro:   IPR006131
- InterPro:   IPR002292 [H]

Pfam domain/function: PF00185 OTCace; PF02729 OTCace_N [H]

EC number: =2.1.3.3 [H]

Molecular weight: Translated: 37777; Mature: 37646

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS00097 CARBAMOYLTRANSFERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEK
CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEC
NSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAV
CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
EDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGINLTYVGDGRNNIAHSLMVA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCCHHHHHHHHHH
GAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSIMITDNIAEAVENTDAIYTDVWVS
HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCEEHHHHHH
MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAE
CCCCHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCH
MEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATLGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TEIQKPYDLKGRSLLKESDFTKAEFEGLIDFAITLKEYKKNGIKHHYLSGKNIALLFEK
CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEC
NSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQQAV
CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHH
EDLAKFSGVPVWNGLTDDWHPTQMLADFMTIKENFGYLEGINLTYVGDGRNNIAHSLMVA
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCCHHHHHHHHHH
GAMLGVNVRICTPKSLNPKEAYVDIAKEKASQYGGSIMITDNIAEAVENTDAIYTDVWVS
HHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECHHHHHHHCCCCEEHHHHHH
MGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIYEKYGLAE
CCCCHHHHHHHHHHHHHHHCHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCH
MEVTDQIFRSEHSKVFDQAENRMHTIKAVMAATLGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA