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The map label for this gene is ypdF [C]

Identifier: 148268187

GI number: 148268187

Start: 1873260

End: 1874315

Strand: Direct

Name: ypdF [C]

Synonym: SaurJH9_1764

Alternate gene names: 148268187

Gene position: 1873260-1874315 (Clockwise)

Preceding gene: 148268185

Following gene: 148268189

Centisome position: 64.45

GC content: 33.05

Gene sequence:

>1056_bases
ATGACAAAAATATCAAAAATAATAGACGAACTGAACAATCAACAAGCTGATGCAGCATGGATTACAACACCGTTGAATGT
ATATTATTTTACTGGATACCGTAGCGAACCCCATGAAAGATTATTTGCATTATTGATTAAGAAAGATGGTAAACAAGTAC
TATTTTGTCCAAAAATGGAAGTCGAAGAAGTCAAAGCATCACCTTTCACAGGTGAAATCGTTGGATATTTAGACACTGAA
AATCCTTTTTCACTTTATCCTCAAACAATCAATAAATTACTAATTGAAAGCGAGCACTTAACAGTAGCACGCCAAAAACA
ATTAATCTCTGGTTTCAATGTCAATTCATTCGGAGATGTTGATTTAACAATCAAACAATTAAGAAATATTAAATCCGAAG
ATGAAATTAGCAAAATACGTAAAGCTGCTGAGTTAGCAGATAAGTGTATCGAAATAGGTGTTTCTTATTTAAAAGAAGGT
GTGACTGAACGTGAAGTAGTCAACCATATTGAGCAAACTATCAAACAATATGGCGTCAATGAAATGAGTTTTGATACGAT
GGTTTTATTTGGAGATCATGCCGCATCACCTCATGGCACACCAGGAGATCGCAGATTAAAAAGCAATGAATATGTACTAT
TTGATTTAGGTGTAATTTATGAGCATTATTGTAGCGATATGACACGTACCATTAAATTTGGTGAACCTAGCAAAGAAGCA
CAAGAAATTTATAATATTGTATTAGAAGCAGAAACATCTGCAATCCAAGCAATTAAACCTGGAATACCTTTAAAAGATAT
CGATCATATCGCTAGAAATATTATTTCAGAAAAAGGTTATGGTGAATATTTCCCTCATCGCTTAGGTCATGGTTTAGGAT
TACAAGAACATGAATATCAAGATGTTTCAAGTACTAATTCTAATTTGTTAGAAGCTGGCATGGTTATTACAATCGAACCA
GGTATTTATGTACCAGGTGTTGCAGGTGTAAGAATTGAAGATGACATACTTGTCACTAATGAAGGATATGAAGTATTAAC
ACATTACGAAAAATAA

Upstream 100 bases:

>100_bases
TTAAAAATTGAAAATCTAGTTAATGTATTAGCTCGATTTTGAAATCTAATAATAATTGGCATAAAATGGAAGTAATATTA
TGTTGAGGAGTGTTTATGAA

Downstream 100 bases:

>100_bases
GGAGTGGGATAAAAATGAAAAGCTTGTTACAAGCACATTCTCATTCAGTCAAACACTGCCAATATAACATTGTAGCGCCT
AAGACATAAATTTTTATCCA

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTE
NPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEG
VTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEA
QEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEP
GIYVPGVAGVRIEDDILVTNEGYEVLTHYEK

Sequences:

>Translated_351_residues
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTE
NPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEG
VTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEA
QEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEP
GIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>Mature_350_residues
TKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTEN
PFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGV
TEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQ
EIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPG
IYVPGVAGVRIEDDILVTNEGYEVLTHYEK

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family

Homologues:

Organism=Homo sapiens, GI11559925, Length=262, Percent_Identity=29.7709923664122, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI149589008, Length=358, Percent_Identity=24.5810055865922, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI260593665, Length=318, Percent_Identity=24.8427672955975, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI264681563, Length=191, Percent_Identity=32.9842931937173, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI93141226, Length=162, Percent_Identity=33.9506172839506, Blast_Score=79, Evalue=9e-15,
Organism=Homo sapiens, GI40385867, Length=248, Percent_Identity=24.1935483870968, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI264681565, Length=201, Percent_Identity=29.3532338308458, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1788728, Length=362, Percent_Identity=33.7016574585635, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789275, Length=379, Percent_Identity=26.6490765171504, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786364, Length=255, Percent_Identity=27.0588235294118, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790282, Length=306, Percent_Identity=25.4901960784314, Blast_Score=71, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17508215, Length=422, Percent_Identity=24.4075829383886, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17509539, Length=181, Percent_Identity=33.1491712707182, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17507601, Length=272, Percent_Identity=25.7352941176471, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6321118, Length=284, Percent_Identity=29.2253521126761, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6320922, Length=248, Percent_Identity=27.4193548387097, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6322999, Length=274, Percent_Identity=26.6423357664234, Blast_Score=79, Evalue=8e-16,
Organism=Saccharomyces cerevisiae, GI6323273, Length=250, Percent_Identity=27.6, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19920384, Length=262, Percent_Identity=26.7175572519084, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21357079, Length=286, Percent_Identity=25.1748251748252, Blast_Score=76, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1530_STAAN (Q7A552)

Other databases:

- EMBL:   BA000018
- PIR:   H89954
- RefSeq:   NP_374818.1
- HSSP:   P81535
- ProteinModelPortal:   Q7A552
- SMR:   Q7A552
- STRING:   Q7A552
- EnsemblBacteria:   EBSTAT00000002339
- GeneID:   1124375
- GenomeReviews:   BA000018_GR
- KEGG:   sau:SA1530
- eggNOG:   COG0006
- GeneTree:   EBGT00050000023792
- HOGENOM:   HBG545079
- ProtClustDB:   CLSK885509
- BioCyc:   SAUR158879:SA1530-MONOMER
- GO:   GO:0006508
- InterPro:   IPR000587
- InterPro:   IPR000994
- InterPro:   IPR001131
- Gene3D:   G3DSA:3.90.230.10
- PANTHER:   PTHR10804

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24; SSF55920 Peptidase_M24_cat_core

EC number: 3.4.-.- [C]

Molecular weight: Translated: 39607; Mature: 39476

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00491 PROLINE_PEPTIDASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKME
CCHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC
VEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDV
HHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCH
DLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVN
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
EMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEA
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHEECCCCCHHH
QEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQ
HHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCC
DVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
CHHCCCCCHHHCCEEEEECCCEECCCCCCEEEECCEEEECCCHHHHCCCCC
>Mature Secondary Structure 
TKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKME
CHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCC
VEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDV
HHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCH
DLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVN
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
EMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEA
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHEECCCCCHHH
QEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQ
HHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCC
DVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
CHHCCCCCHHHCCEEEEECCCEECCCCCCEEEECCEEEECCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146