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The map label for this gene is ydeE [H]

Identifier: 148267990

GI number: 148267990

Start: 1669118

End: 1670011

Strand: Direct

Name: ydeE [H]

Synonym: SaurJH9_1563

Alternate gene names: 148267990

Gene position: 1669118-1670011 (Clockwise)

Preceding gene: 148267989

Following gene: 148267997

Centisome position: 57.42

GC content: 33.56

Gene sequence:

>894_bases
ATGATTGAATTAATTGGAGTGAAAGTTTTGGACGTTATCAAGCAAATACAACAGGCAATTGTTTATATTGAAGATCGTTT
ATTAGAGCCTTTCAATTTGCAAGAATTAAGTGATTACGTTGGTCTTTCGCCATACCATCTTGATCAATCATTTAAAATGA
TTGTCGGCTTATCTCCAGAAGCTTATGCACGCGCGCGTAAAATGACACTCGCTGCAAATGATGTGATTAATGGTGCTACA
CGACTTGTAGATATCGCTAAAAAATATCACTATGCAAATTCAAATGATTTTGCAAATGATTTTAGTGATTTTCACGGCGT
ATCACCTATTCAAGCTTCTACTAAAAAAGATGAATTACAAATTCAAGAGCGATTATATATCAAATTATCAACTACTGAGA
GAGCACCCTATCCATACAGATTAGAAGAGACAGATGATATTTCATTGGTTGGATATGCACGATTTATAGACACTAAGTAT
TTGTCACATCCTTTTAATGTTCCGGATTTTTTAGAAGACTTGCTCATTGATGGTAAAATTAAAGAGTTACGACGATATAA
TGACGTTAGTCCATTTGAACTATTTGTTATTAGTTGTCCTCTTGAAAATGGTTTAGAAATATTTGTAGGTGTACCAAGTG
AACGTTATCCTGCACACTTAGAAAGCCGATTTTTACCTGGCAAACATTGTGCGAAATTCAATTTACAAGGTGAAATTGAT
TATGCAACTAATGAAGCTTGGTACTATATTGAATCAAGTTTGCAGTTAACATTGCCATATGAACGAAATGATTTATATGT
TGAAGTGTACCCTCTCGATATTTCATTTAATGACCCATTCACTAAAATTCAGCTTTGGATTCCTGTTAAACAGAGTCCTT
ATGACGAAGATTAA

Upstream 100 bases:

>100_bases
ACTATATTATGAAATTATATTTTACAATGCCCAAAACTATTTTAATAATCATTGAACAAATGGGTGTATAATTTATAGAA
ATAATGTAGAATAAAAATAA

Downstream 100 bases:

>100_bases
AAATTAAAAACAAAGAAGCCCCCTAATATATCTATAGGTCTACAAATGGCCTTAGATTCTATTAGGGGGCATATTAATAT
GTTAATTTAGTTCGATAACA

Product: transcription activator, effector binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMTLAANDVINGAT
RLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKY
LSHPFNVPDFLEDLLIDGKIKELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED

Sequences:

>Translated_297_residues
MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMTLAANDVINGAT
RLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKY
LSHPFNVPDFLEDLLIDGKIKELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
>Mature_297_residues
MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPEAYARARKMTLAANDVINGAT
RLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQIQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKY
LSHPFNVPDFLEDLLIDGKIKELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34374; Mature: 34374

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPE
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCCCEEEEEECCCH
AYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQ
HHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHE
IQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKI
EEEEEEEEEECCCCCCCCEECCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCHH
KELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
HHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEECCEEEE
YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
EECCCEEEEEECCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MIELIGVKVLDVIKQIQQAIVYIEDRLLEPFNLQELSDYVGLSPYHLDQSFKMIVGLSPE
CEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEECCCCEEEEEECCCH
AYARARKMTLAANDVINGATRLVDIAKKYHYANSNDFANDFSDFHGVSPIQASTKKDELQ
HHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHE
IQERLYIKLSTTERAPYPYRLEETDDISLVGYARFIDTKYLSHPFNVPDFLEDLLIDGKI
EEEEEEEEEECCCCCCCCEECCCCCCEEEEEHHHHHHHHHHCCCCCCHHHHHHHHCCCHH
KELRRYNDVSPFELFVISCPLENGLEIFVGVPSERYPAHLESRFLPGKHCAKFNLQGEID
HHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCEEEECCEEEE
YATNEAWYYIESSLQLTLPYERNDLYVEVYPLDISFNDPFTKIQLWIPVKQSPYDED
EECCCEEEEEECCEEEEECCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]