Click here to switch to the map view.

The map label for this gene is ymfN [H]

Identifier: 148267493

GI number: 148267493

Start: 1097800

End: 1099491

Strand: Direct

Name: ymfN [H]

Synonym: SaurJH9_1059

Alternate gene names: 148267493

Gene position: 1097800-1099491 (Clockwise)

Preceding gene: 148267492

Following gene: 148267494

Centisome position: 37.77

GC content: 33.75

Gene sequence:

>1692_bases
GTGACTATTAAAGTTTTAAATGAACCTTCACCAAAACTATTAACAACATGGTATGCAGAGCAAGTCACTCAAGGGAAAAT
AAAAACAAGCAAATATGTTAGAAAAGAATGTGAGAGACATCTTAGATATCTAGAAAATGGAGGTAAATGGGTATTTGATG
AAGAATTAGCGCATCGTCCTATTCGATTTATAGAAAAGTTTTGTAAACCTTCCAAAGGATCTAAACGTCAACTTGTATTA
CAGCCATGGCAACATTTTATTATCGGCAGTTTGTTTGGTTGGGTTCATAAAGAAACAAAACTGCGCAGGTTTAAAGAAGC
TTTGATATTTATGGGGCGAAAAAATGGTAAAACAACCACTATTTCTGGGGTTGCTAACTATGCTGTATCACAAGATGGAG
AAAATGGTGCAGAAATTCATTTGTTAGCAAACGTAATGAAACAAGCTAGGATTCTATTTGATGAATCTAAGGCGATGATT
AAAGCTAGCCCAAAGCTTGATAAAAATTTCAGAACATTAAGAGATGAAATCCATTATGACGCAACGATATCAAAAATTAT
GCCCCAAGCATCAGATAGCGATAAGTTAGATGGATTGAATACACACATGGGGATTTTTGATGAAATTCATGAATTTAAAG
ACTATAAATTGATTTCAGTTATAAAAAACTCAAGAGCTGCAAGGTTACAACCTCTTCTCATCTACATTACGACAGCAGGG
TATCAATTAGATGGTCCACTTGTTGATATGGTAGAAGCGGGAAGAGACACCTTAGATCAAATCATAGAAGACGAAAGAAC
TTTTTATTATTTAGCATCTTTGGATGATGACGATGATATTAATGATTCGTCGAACTGGATAAAAGCAAATCCCAACTTAG
GTGTCTCTATAAATTTAGATGAGATGAAAGAAGAGTGGGAAAAAGCTAAGAGAACACCAGCTGAACGTGGAGATTTTATA
ACCAAAAGGTTTAATATCTTTGCTAATAATGACGAGATGAGTTTTATTGATTACCCAACACTCCAAAAAAATAATGAAAT
TGTTTCTTTAGAAGAGCTGGAAGGCAGACCGTGCACGATTGGTTATGATTTATCAGAAACAGAGGACTTTACAGCCGCGT
GTGCTACTTTTGCGTTAGATAATGGTAAAGTTGCAGTTTTATCGCATTCATGGATTCCTAAGCACAAAGTTGAATATTCT
AACGAAAAAATACCCTATAGAGAATGGGAAGAAGATGGCTTATTAACAGTGCAAGACAAGCCTTATATTGACTACCAAGA
TGTTTTAAATTGGATAATTAAGATGAATGAGCATTATGTAGTAGAAAAAATTACTTATGATAGAGCGAACGCATTCAAAC
TAAATCAAGAGTTAAAAAATTACGGGTTTGAAACGGAAGAAACAAGACAAGGAGCTTTGACCTTGAGCCCTGCATTGAAG
GATTTAAAAGAAATGTTTTTAGATGGGAAAATAATATTTAATAATAATCCTTTAATGAAATGGTATATCAATAATGTTCA
GTTGAAACTAGACAGAAACGGAAACTGGTTGCCGTCTAAGCAAAGCAGATATCGTAAAATAGATGGCTTTGCAGCATTTT
TAAACACATATACAGATATTATGAATAAAGTTGTTTCTGATAGTGGTGAAGGAAACATAGAGTTTATTAGTATTAAAGAC
ATAATGCGTTAA

Upstream 100 bases:

>100_bases
GAACTGACAAAAACAGTTCAAACACTAAATAACTTACTCAAGTCTATGGGTTTAACTGCAGCACAAAGAAAAAAGATAGT
TCAAGAAGAAGGTGGATTCG

Downstream 100 bases:

>100_bases
GGAGGTGAATGTTATCGCAAAAGAGAATATTGTCACACGCATAAAGAAAAAATTGATAGACAATTGGATTGATCAGTCAA
CTTCTAAGCTTTATGACTTT

Product: phage terminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 562

Protein sequence:

>563_residues
MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVL
QPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMI
KASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAG
YQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFI
TKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYS
NEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALK
DLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIMNKVVSDSGEGNIEFISIKD
IMR

Sequences:

>Translated_563_residues
MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVL
QPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMI
KASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAG
YQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFI
TKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYS
NEKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALK
DLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIMNKVVSDSGEGNIEFISIKD
IMR
>Mature_562_residues
TIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQLVLQ
PWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIK
ASPKLDKNFRTLRDEIHYDATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAGY
QLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLDEMKEEWEKAKRTPAERGDFIT
KRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYSN
EKIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALKD
LKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIMNKVVSDSGEGNIEFISIKDI
MR

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 65212; Mature: 65081

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRP
CEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHCCH
IRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTT
HHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE
ISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYD
EHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCC
ATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAG
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEEEECC
YQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLD
EEECCCHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEHH
EMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTI
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEEHHHCCCCCEEE
GYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIPYREWEEDGLLTVQDK
ECCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALK
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHCCCCEEECHHHH
DLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDI
HHHHHHHCCEEEECCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MNKVVSDSGEGNIEFISIKDIMR
HHHHHCCCCCCCEEEEEEHHHCC
>Mature Secondary Structure 
TIKVLNEPSPKLLTTWYAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRP
EEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEECHHHHCCH
IRFIEKFCKPSKGSKRQLVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTT
HHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEE
ISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRDEIHYD
EHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCC
ATISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDYKLISVIKNSRAARLQPLLIYITTAG
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCEEEEEEEECC
YQLDGPLVDMVEAGRDTLDQIIEDERTFYYLASLDDDDDINDSSNWIKANPNLGVSINLD
EEECCCHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCEEEEHH
EMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSFIDYPTLQKNNEIVSLEELEGRPCTI
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCEEEHHHCCCCCEEE
GYDLSETEDFTAACATFALDNGKVAVLSHSWIPKHKVEYSNEKIPYREWEEDGLLTVQDK
ECCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
PYIDYQDVLNWIIKMNEHYVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALK
CCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCHHCCCCEEECHHHH
DLKEMFLDGKIIFNNNPLMKWYINNVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDI
HHHHHHHCCEEEECCCCEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
MNKVVSDSGEGNIEFISIKDIMR
HHHHHCCCCCCCEEEEEEHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]