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The map label for this gene is rbsC [H]

Identifier: 148261224

GI number: 148261224

Start: 2468165

End: 2469148

Strand: Reverse

Name: rbsC [H]

Synonym: Acry_2237

Alternate gene names: 148261224

Gene position: 2469148-2468165 (Counterclockwise)

Preceding gene: 148261225

Following gene: 148261223

Centisome position: 72.85

GC content: 70.83

Gene sequence:

>984_bases
ATGAGCGCCGTCATGAACAGGCCGTCCCGCCTTGCCGGGCTTGCGGCGCGCGCCGGCCACGACACGCCGGCGGCGATGCT
GCGCGCGCAGAGCGTCTACATCGCCTTCGCCCTGCTGGTGATCGTCGACCTGATCTTCACGCCGGGGTTCCGCAACCCGA
TCGTGATCCGCAACCTGCTGTTCCAGGCCGCGCCGATCATCCTCATCACGCTCGGGCAGAGCCTGGCGATCGGCACGCGG
GGGATCGACCTGTCGGTCGGCTCGTCGATGGCGCTCGCCGCATCGGTGATGGCCCTGGCGCTGCCGGGCGGCGCGGGTGT
TTCCGTCGTCGCGGCGCTGGGCACCGGCCTCGCGGTGGGCCTGCTGAACGGCGCGCTCATCGCCTTCCTCGACATCAATC
CGCTGATCTCGAGCCTGGCGCTGCTGGTCACCGCCCGCGGCCTGGCCGAGGCGCTGCTCGATGGATCGCGCGTGTCGCTG
CCCACGGGCGGGGTGTTCGACTGGCTCGGCATCGGCGCCGTGTCGCTGGTGCCGATGGTCGCGATCATCGCCCTCGCGCT
GGCCGCCACGGTCGCCCTCGTCGTGCGCACCACCGTCTTCGGGCGCAGCCTCGTCTTCATCGGCGCCAACCAGGCGGCGG
CGGTGATCGCCGGCATCAAGGTGCGGCGGACGCTGTTCGCCGTCTATGCGGCGAGCGGCCTGCTTGCGGGGCTTGCCGGC
CTGTTCGCCGCCGCCCGGCTCGGCGCGGCGGATCCCAACTATATCGGGCTGAATTTCGAGCTTGACGCGATCGCCGCGGC
CGTGATCGGCGGCACGCCGCTCTCCGGCGGCCGGGTCTCGATCGCCGGCGGCGTCTTCGGCGTCCTGCTGCTGCAGGTCC
TGGGAGCGAGCTTCATCATGAACGACATCAATTTCAGCTACGCGCAGATCCTCAAGGCGGCCTTCATCGTCGCCGCGCTG
TACCTGCAGCGGGCCGGCGGATGA

Upstream 100 bases:

>100_bases
TCCTCGACGAGGGACGTGTCGCGGACACGATGGAAACCGCCGGCGCCGGCGTGCAGGACGTGCTCGACCGGCTGGCCGCC
CCGCACGAGCGGGCGGGAGC

Downstream 100 bases:

>100_bases
GCGGCGCGCCAGCCGCCGGTGCGGGCATCGCGGCACCGGACACCGAACGCCGCGCGCGGATCATCGCGCTGATCCGGTCG
CGCGGCGCCATCGTGGTCCT

Product: monosaccharide-transporting ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MSAVMNRPSRLAGLAARAGHDTPAAMLRAQSVYIAFALLVIVDLIFTPGFRNPIVIRNLLFQAAPIILITLGQSLAIGTR
GIDLSVGSSMALAASVMALALPGGAGVSVVAALGTGLAVGLLNGALIAFLDINPLISSLALLVTARGLAEALLDGSRVSL
PTGGVFDWLGIGAVSLVPMVAIIALALAATVALVVRTTVFGRSLVFIGANQAAAVIAGIKVRRTLFAVYAASGLLAGLAG
LFAAARLGAADPNYIGLNFELDAIAAAVIGGTPLSGGRVSIAGGVFGVLLLQVLGASFIMNDINFSYAQILKAAFIVAAL
YLQRAGG

Sequences:

>Translated_327_residues
MSAVMNRPSRLAGLAARAGHDTPAAMLRAQSVYIAFALLVIVDLIFTPGFRNPIVIRNLLFQAAPIILITLGQSLAIGTR
GIDLSVGSSMALAASVMALALPGGAGVSVVAALGTGLAVGLLNGALIAFLDINPLISSLALLVTARGLAEALLDGSRVSL
PTGGVFDWLGIGAVSLVPMVAIIALALAATVALVVRTTVFGRSLVFIGANQAAAVIAGIKVRRTLFAVYAASGLLAGLAG
LFAAARLGAADPNYIGLNFELDAIAAAVIGGTPLSGGRVSIAGGVFGVLLLQVLGASFIMNDINFSYAQILKAAFIVAAL
YLQRAGG
>Mature_326_residues
SAVMNRPSRLAGLAARAGHDTPAAMLRAQSVYIAFALLVIVDLIFTPGFRNPIVIRNLLFQAAPIILITLGQSLAIGTRG
IDLSVGSSMALAASVMALALPGGAGVSVVAALGTGLAVGLLNGALIAFLDINPLISSLALLVTARGLAEALLDGSRVSLP
TGGVFDWLGIGAVSLVPMVAIIALALAATVALVVRTTVFGRSLVFIGANQAAAVIAGIKVRRTLFAVYAASGLLAGLAGL
FAAARLGAADPNYIGLNFELDAIAAAVIGGTPLSGGRVSIAGGVFGVLLLQVLGASFIMNDINFSYAQILKAAFIVAALY
LQRAGG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693214, Length=245, Percent_Identity=40, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1788896, Length=289, Percent_Identity=33.5640138408304, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=34.983498349835, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=30.3125, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI145693152, Length=300, Percent_Identity=31.6666666666667, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789992, Length=128, Percent_Identity=43.75, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788471, Length=267, Percent_Identity=30.3370786516854, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082395, Length=252, Percent_Identity=34.9206349206349, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787793, Length=256, Percent_Identity=32.03125, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787794, Length=300, Percent_Identity=29, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32869; Mature: 32737

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVMNRPSRLAGLAARAGHDTPAAMLRAQSVYIAFALLVIVDLIFTPGFRNPIVIRNLL
CCCHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FQAAPIILITLGQSLAIGTRGIDLSVGSSMALAASVMALALPGGAGVSVVAALGTGLAVG
HHHCCEEEEECCCCCEECCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LLNGALIAFLDINPLISSLALLVTARGLAEALLDGSRVSLPTGGVFDWLGIGAVSLVPMV
HHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
AIIALALAATVALVVRTTVFGRSLVFIGANQAAAVIAGIKVRRTLFAVYAASGLLAGLAG
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFAAARLGAADPNYIGLNFELDAIAAAVIGGTPLSGGRVSIAGGVFGVLLLQVLGASFIM
HHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
NDINFSYAQILKAAFIVAALYLQRAGG
HHCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAVMNRPSRLAGLAARAGHDTPAAMLRAQSVYIAFALLVIVDLIFTPGFRNPIVIRNLL
CCHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FQAAPIILITLGQSLAIGTRGIDLSVGSSMALAASVMALALPGGAGVSVVAALGTGLAVG
HHHCCEEEEECCCCCEECCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LLNGALIAFLDINPLISSLALLVTARGLAEALLDGSRVSLPTGGVFDWLGIGAVSLVPMV
HHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
AIIALALAATVALVVRTTVFGRSLVFIGANQAAAVIAGIKVRRTLFAVYAASGLLAGLAG
HHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFAAARLGAADPNYIGLNFELDAIAAAVIGGTPLSGGRVSIAGGVFGVLLLQVLGASFIM
HHHHHHCCCCCCCEEEEEEEHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
NDINFSYAQILKAAFIVAALYLQRAGG
HHCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]