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The map label for this gene is yhjC [H]

Identifier: 148261219

GI number: 148261219

Start: 2462369

End: 2463277

Strand: Reverse

Name: yhjC [H]

Synonym: Acry_2231

Alternate gene names: 148261219

Gene position: 2463277-2462369 (Counterclockwise)

Preceding gene: 148261223

Following gene: 148261218

Centisome position: 72.68

GC content: 62.49

Gene sequence:

>909_bases
ATGGATCGCCTCGCCGCCCTCGAGCTATTCGTCCGTATCGTCGATCGTGGCAGTTTTACCGCTGCGGCGGCGGATTGCTC
CATCTCCCGACCGGCAGCGACCGCCACGATCAACGCGCTGGAGAAGAGGTTGGGAACCAGGTTGCTGCAACGCTCGACAC
GGCATGTGCAGCCGACCGTCGAGGGTGAAGCCTACTACCGACGCTGCATTGGTATCCTTGCCGATCTCGAGGATGCGGAC
CGGGGGGCCAGCGGTGCCGTGGCAGGGCTGCTGCGCGTCGACATGGTCGGCACGCTGGCGCGCATCGTGTTGCCGGCACT
ACCGACCTTTCTAGCTCTGCATCCAGCCGTGACGGTGCATATCGGTGAGGGCGAGCGCTTTGTCGATTTGGTACGCGAAG
GGGTTGATTGTGTCGTGCGAGCGGGCACTCTTCCTGATAGCGATATGATCGTCCGGCATCTCGGCGTGTTGGAGGAGATC
ATCTGTGCCAGCCCCGCCTATCTCAGCGAACATGGCGTGCCAGCAACGCCGGATCAGCTGGACGGGCATTTCATGGTCGG
ATTCGTCTCCTCGCGCACGGGCCAGCCCTTGCCGCTGGAATTCATGGTCGATGGCGTGAAGGTCGAGAGGACGTTGCCGG
CTCGCGTCATGGTTAATGGGGCGGACACGAGTGCTGCTGCGGCGCGCCTCGGGATGGGGCTGGTGCAGGCGCCGCGCTTG
CGGTTCAAGGATGATCTAAACACCGGAGCACTCGTGGAGATTCTCCAGGACTTCCAGCCCAGTCCCACTCCGATTTCCGT
CATCTATCCGAATCATCGCCAGCTTTCGCCGCGCGTGCGGGTCTTTGTCGACTGGCTCGTTGAAACGATCGCACCTCTGC
TTGGCCGCTCTGGATACAAGGTGCCGTGA

Upstream 100 bases:

>100_bases
TGAGGGTCTCCTGTTCCGGTGCTACGGATTTGGCCCGCCCGCCCGACGGAATAAGGCCGCTGTTGCAGACGACTTTGTTT
TGCAGGACAGAATAATGACC

Downstream 100 bases:

>100_bases
TCGGTCTGCCGCCGCATCCATCGGCGCCGTGGCGCTTGCTCCGCATCTTATTCCGCATAGTGTAATGTGATCGGGTGTTG
AACTGGCCGGCCGCAAACCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDRLAALELFVRIVDRGSFTAAAADCSISRPAATATINALEKRLGTRLLQRSTRHVQPTVEGEAYYRRCIGILADLEDAD
RGASGAVAGLLRVDMVGTLARIVLPALPTFLALHPAVTVHIGEGERFVDLVREGVDCVVRAGTLPDSDMIVRHLGVLEEI
ICASPAYLSEHGVPATPDQLDGHFMVGFVSSRTGQPLPLEFMVDGVKVERTLPARVMVNGADTSAAAARLGMGLVQAPRL
RFKDDLNTGALVEILQDFQPSPTPISVIYPNHRQLSPRVRVFVDWLVETIAPLLGRSGYKVP

Sequences:

>Translated_302_residues
MDRLAALELFVRIVDRGSFTAAAADCSISRPAATATINALEKRLGTRLLQRSTRHVQPTVEGEAYYRRCIGILADLEDAD
RGASGAVAGLLRVDMVGTLARIVLPALPTFLALHPAVTVHIGEGERFVDLVREGVDCVVRAGTLPDSDMIVRHLGVLEEI
ICASPAYLSEHGVPATPDQLDGHFMVGFVSSRTGQPLPLEFMVDGVKVERTLPARVMVNGADTSAAAARLGMGLVQAPRL
RFKDDLNTGALVEILQDFQPSPTPISVIYPNHRQLSPRVRVFVDWLVETIAPLLGRSGYKVP
>Mature_302_residues
MDRLAALELFVRIVDRGSFTAAAADCSISRPAATATINALEKRLGTRLLQRSTRHVQPTVEGEAYYRRCIGILADLEDAD
RGASGAVAGLLRVDMVGTLARIVLPALPTFLALHPAVTVHIGEGERFVDLVREGVDCVVRAGTLPDSDMIVRHLGVLEEI
ICASPAYLSEHGVPATPDQLDGHFMVGFVSSRTGQPLPLEFMVDGVKVERTLPARVMVNGADTSAAAARLGMGLVQAPRL
RFKDDLNTGALVEILQDFQPSPTPISVIYPNHRQLSPRVRVFVDWLVETIAPLLGRSGYKVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=36.0824742268041, Blast_Score=201, Evalue=6e-53,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=29.4520547945205, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=31.4878892733564, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=30, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=27.719298245614, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=26.5993265993266, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789440, Length=302, Percent_Identity=26.8211920529801, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=23.7931034482759, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=138, Percent_Identity=29.7101449275362, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32616; Mature: 32616

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLAALELFVRIVDRGSFTAAAADCSISRPAATATINALEKRLGTRLLQRSTRHVQPTV
CCHHHHHHHHHHHHHCCCCEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGEAYYRRCIGILADLEDADRGASGAVAGLLRVDMVGTLARIVLPALPTFLALHPAVTVH
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IGEGERFVDLVREGVDCVVRAGTLPDSDMIVRHLGVLEEIICASPAYLSEHGVPATPDQL
ECCCHHHHHHHHHCHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCC
DGHFMVGFVSSRTGQPLPLEFMVDGVKVERTLPARVMVNGADTSAAAARLGMGLVQAPRL
CCCEEEEEEECCCCCCCCHHHEECCEEEEEECCEEEEEECCCHHHHHHHHHCHHHHCCCC
RFKDDLNTGALVEILQDFQPSPTPISVIYPNHRQLSPRVRVFVDWLVETIAPLLGRSGYK
HHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
VP
CC
>Mature Secondary Structure
MDRLAALELFVRIVDRGSFTAAAADCSISRPAATATINALEKRLGTRLLQRSTRHVQPTV
CCHHHHHHHHHHHHHCCCCEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
EGEAYYRRCIGILADLEDADRGASGAVAGLLRVDMVGTLARIVLPALPTFLALHPAVTVH
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
IGEGERFVDLVREGVDCVVRAGTLPDSDMIVRHLGVLEEIICASPAYLSEHGVPATPDQL
ECCCHHHHHHHHHCHHHEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCC
DGHFMVGFVSSRTGQPLPLEFMVDGVKVERTLPARVMVNGADTSAAAARLGMGLVQAPRL
CCCEEEEEEECCCCCCCCHHHEECCEEEEEECCEEEEEECCCHHHHHHHHHCHHHHCCCC
RFKDDLNTGALVEILQDFQPSPTPISVIYPNHRQLSPRVRVFVDWLVETIAPLLGRSGYK
HHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
VP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]