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The map label for this gene is smpB

Identifier: 148260900

GI number: 148260900

Start: 2104939

End: 2105418

Strand: Reverse

Name: smpB

Synonym: Acry_1907

Alternate gene names: 148260900

Gene position: 2105418-2104939 (Counterclockwise)

Preceding gene: 148260901

Following gene: 148260899

Centisome position: 62.12

GC content: 67.92

Gene sequence:

>480_bases
ATGGCCGAGCCCCGGAAATCCGGGCTGATCTCCCACGGGATCGCGGCGCAGAACCGCAAGGCCCGGTTCAACTACACGAT
CAAGGACACGGTCGAGGCGGGCATCGTCCTGCGCGGCGCCGAGGTGAAGTCGCTGCGCATGGGCCGCGCCACGCTGTCCG
AGGCCTTCGCCGGCGAGCGCGACGGCGAGATGTATCTCTTCAACATGTACATCCCCGAATACCAGGGCGGCGTGCTCTCC
CGCTTCGACACCAAGGGCCCGCGCAAGCTGCTGCTCAAGCGCAAGCAGATCGACCAGCTCCTCGGCGCCATCGCCCGCCA
GGGCTCGACCGTCGTCCCGCTCGACGTGCATTTCAACCCGCGCGGCCTCGCCAAGGTCACGCTCGGCATCGCCGAGGGCC
GCAAGCAGCACGACAAGCGCCAGGCCATCGCCAAGCGCGACTGGGAACGCGACAAGGCCCGCATCCTCAAGAACCGCTGA

Upstream 100 bases:

>100_bases
GATTCGGCTCGGAATTCTGCCGCCTGCCGCTCGCCCCGCTCGCCGAGGCGACGAAGGCGCAGATGCGCGCCGCGATGACC
GGGCTCGGGCTGCTCGCCTG

Downstream 100 bases:

>100_bases
CCCCCGCCGCGCGCTGGACCGCGAGCCCCTTCACCCCATATCATCGTCCGGCCCGGAAGGAGAACGGCGATGGACGAAGC
GGACAAGCAGGGAAACGACG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MAEPRKSGLISHGIAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGERDGEMYLFNMYIPEYQGGVLS
RFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNPRGLAKVTLGIAEGRKQHDKRQAIAKRDWERDKARILKNR

Sequences:

>Translated_159_residues
MAEPRKSGLISHGIAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGERDGEMYLFNMYIPEYQGGVLS
RFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNPRGLAKVTLGIAEGRKQHDKRQAIAKRDWERDKARILKNR
>Mature_158_residues
AEPRKSGLISHGIAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGERDGEMYLFNMYIPEYQGGVLSR
FDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNPRGLAKVTLGIAEGRKQHDKRQAIAKRDWERDKARILKNR

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=144, Percent_Identity=44.4444444444444, Blast_Score=121, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_ACICJ (A5FZS6)

Other databases:

- EMBL:   CP000697
- RefSeq:   YP_001235027.1
- ProteinModelPortal:   A5FZS6
- SMR:   A5FZS6
- STRING:   A5FZS6
- GeneID:   5160775
- GenomeReviews:   CP000697_GR
- KEGG:   acr:Acry_1907
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   ACRY349163:ACRY_1907-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17915; Mature: 17784

Theoretical pI: Translated: 11.14; Mature: 11.14

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPRKSGLISHGIAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGER
CCCCCCCCCHHCCCCCCCCCEEEEEEEHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCC
DGEMYLFNMYIPEYQGGVLSRFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNP
CCCEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
RGLAKVTLGIAEGRKQHDKRQAIAKRDWERDKARILKNR
CCCEEEEEEHHHCHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
AEPRKSGLISHGIAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGER
CCCCCCCCHHCCCCCCCCCEEEEEEEHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCC
DGEMYLFNMYIPEYQGGVLSRFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNP
CCCEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC
RGLAKVTLGIAEGRKQHDKRQAIAKRDWERDKARILKNR
CCCEEEEEEHHHCHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA