Click here to switch to the map view.

The map label for this gene is ycdI [C]

Identifier: 148260769

GI number: 148260769

Start: 1954602

End: 1955186

Strand: Reverse

Name: ycdI [C]

Synonym: Acry_1774

Alternate gene names: 148260769

Gene position: 1955186-1954602 (Counterclockwise)

Preceding gene: 148260770

Following gene: 148260768

Centisome position: 57.69

GC content: 65.64

Gene sequence:

>585_bases
ATGACGCTCGATGACGGCGCGCTCGACGCGCTGTTCCGCACCGCCCGCACCAAATCCGCCTGGACGGCCGACCCGGTGCC
GGACGAAACCCTTCACCAGCTCTACGACCTGCTGAAGAACGGCCCCACCTCGGCCAACTGCTCGCCCGCGCGCTTCCTCT
TCCTGCGCAGCGCGGAATCGCGCGAGCGGCTGAAACCCGCCCTCAACCCCGGCAATATCGAGAAGACGATGGCCGCGCCG
GTCACCGTCATCGTCGCGCACGATCCGCAATTCTACGAGAACCTGCCGAAGCTTTTCCCGCACGCCGATGCCCGCGCCTG
GTTCGCCGGCAACCCCGACCTCGCCGAGGAAACCGCCTTCCGCAACGGCACGCTGCAAGGTGCCTATCTCATCATGGCCG
CGCGTGCCCTCGGGCTCGATTGCGGGCCGATGTCCGGTTTCGACAAGGCGAAGGTCGACCAGATTTTCCTTTCCGAACAG
GGATGGCGTTCGAATTTCCTCGTCAATCTCGGCCATGGCCAGAAAGACGACCCGTTCCCCCGCGCCCCGCGCCTCGAATT
CGACGAAGCCTGCGTCCTGCTCTGA

Upstream 100 bases:

>100_bases
GAACCTGCTCAAGCATTACGTGCCCGAAGTGAAATCGGTCCGGCAGGTGATGGCCTGAGCCGGCGATCCCCGCCGTCCCC
CAGCTGAACGGAGAGTCCGC

Downstream 100 bases:

>100_bases
GATGGCGCCGCCCGCCGCGCGCCTGCTGGTGCTCGATGCCGCGCTGAAGCGCGCCCATGTCGGCGTGATCGCGGGCGAAC
AGGTTCTCGCCGCCCGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTLDDGALDALFRTARTKSAWTADPVPDETLHQLYDLLKNGPTSANCSPARFLFLRSAESRERLKPALNPGNIEKTMAAP
VTVIVAHDPQFYENLPKLFPHADARAWFAGNPDLAEETAFRNGTLQGAYLIMAARALGLDCGPMSGFDKAKVDQIFLSEQ
GWRSNFLVNLGHGQKDDPFPRAPRLEFDEACVLL

Sequences:

>Translated_194_residues
MTLDDGALDALFRTARTKSAWTADPVPDETLHQLYDLLKNGPTSANCSPARFLFLRSAESRERLKPALNPGNIEKTMAAP
VTVIVAHDPQFYENLPKLFPHADARAWFAGNPDLAEETAFRNGTLQGAYLIMAARALGLDCGPMSGFDKAKVDQIFLSEQ
GWRSNFLVNLGHGQKDDPFPRAPRLEFDEACVLL
>Mature_193_residues
TLDDGALDALFRTARTKSAWTADPVPDETLHQLYDLLKNGPTSANCSPARFLFLRSAESRERLKPALNPGNIEKTMAAPV
TVIVAHDPQFYENLPKLFPHADARAWFAGNPDLAEETAFRNGTLQGAYLIMAARALGLDCGPMSGFDKAKVDQIFLSEQG
WRSNFLVNLGHGQKDDPFPRAPRLEFDEACVLL

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787243, Length=189, Percent_Identity=59.7883597883598, Blast_Score=243, Evalue=5e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21416; Mature: 21285

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDDGALDALFRTARTKSAWTADPVPDETLHQLYDLLKNGPTSANCSPARFLFLRSAES
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCH
RERLKPALNPGNIEKTMAAPVTVIVAHDPQFYENLPKLFPHADARAWFAGNPDLAEETAF
HHHHCCCCCCCCCCHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHH
RNGTLQGAYLIMAARALGLDCGPMSGFDKAKVDQIFLSEQGWRSNFLVNLGHGQKDDPFP
CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
RAPRLEFDEACVLL
CCCCCCCCCCEECC
>Mature Secondary Structure 
TLDDGALDALFRTARTKSAWTADPVPDETLHQLYDLLKNGPTSANCSPARFLFLRSAES
CCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEEEECCCH
RERLKPALNPGNIEKTMAAPVTVIVAHDPQFYENLPKLFPHADARAWFAGNPDLAEETAF
HHHHCCCCCCCCCCHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHH
RNGTLQGAYLIMAARALGLDCGPMSGFDKAKVDQIFLSEQGWRSNFLVNLGHGQKDDPFP
CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC
RAPRLEFDEACVLL
CCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194 [H]