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The map label for this gene is ygfF [C]

Identifier: 148260646

GI number: 148260646

Start: 1821333

End: 1822097

Strand: Reverse

Name: ygfF [C]

Synonym: Acry_1649

Alternate gene names: 148260646

Gene position: 1822097-1821333 (Counterclockwise)

Preceding gene: 148260647

Following gene: 148260644

Centisome position: 53.76

GC content: 72.68

Gene sequence:

>765_bases
ATGACCGCGCCGTTCGAGGGCGCGGCGCTGGTGACGGGCGGCGCGAAGCGGCTGGGGGCCGCGATCGTCCGCAGCCTGTC
GCAGGCCGGCTTTCCGGTCGTCATCCACCACCGCGCCTCGTCCGGCGAGGCCGAAGCCCTTGCCGCCGAGCTGCGCGCCC
AGGGCGGGGTGGCGCATGTCCTGGCCGCCGACCTTGCCGATCCGGCGGCGGTCGAATCCCTGATCGCGCGGGCCGAGGCG
CTGGCCGGGCCGATCGGCGTGCTGGTCAACAACGCCTCGCGCTTCGAGTTCGATTCCGCCGCCAGCGTCACCGCCGCCTC
GATCGCCGCCCACATGGCGCCGAACCTCGCCGCGCCGGTGCTGCTGGCGCGCGACATGGCGGCGCGGATCGGCGGCCGGC
AGGGCGTGATCGTCAACCTGCTCGACCAGAAACTCGCGAACCTGAACCCGGATTTCTTCGCCTATACGCTGTCCAAGGCC
GCCCTCGCCGCGGCGACCGAGATGCTCGCGATGGCGCTGGCGCCGGCGGTCCGGGTCTGCGGTGTCGCGCCGGGGCTGAC
GCTGATCGCCGCGAAGCAGAGCGAGGAGAATTTCCGCCGCGGCCAGAGCGCAACACCGCTGCGGCGCGGCTCGCAGCCGG
AGGACATCGCGCGCGCGGTGCGTTTCATCGTCGAAACCCCGTCGGTCACCGGCACCACGCTCTATGTCGATGCCGGCGAG
CACCTGATGCGCCGGCAGCGCGACGTGTCGTTCAACGCCGGGTAA

Upstream 100 bases:

>100_bases
ATCTCGCCGCCTTCGGCACCGCGCGGCTGTTCGACCTGCTCGCCCCGCGCCCGACCGCGCTGCTCGACGATCCCGCCGCC
CTCGCCGCGGCGCTGTTCCC

Downstream 100 bases:

>100_bases
CGCGGCGGATCAGCCGGGCGAGCGGCAGCACGGCGCGCACCGGCCAGGGCCCATCGGGCCAGACCAGTTCGGCGTTCAGC
CTGGCGAGCGCCGCGGCGTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: ORFC [H]

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTAPFEGAALVTGGAKRLGAAIVRSLSQAGFPVVIHHRASSGEAEALAAELRAQGGVAHVLAADLADPAAVESLIARAEA
LAGPIGVLVNNASRFEFDSAASVTAASIAAHMAPNLAAPVLLARDMAARIGGRQGVIVNLLDQKLANLNPDFFAYTLSKA
ALAAATEMLAMALAPAVRVCGVAPGLTLIAAKQSEENFRRGQSATPLRRGSQPEDIARAVRFIVETPSVTGTTLYVDAGE
HLMRRQRDVSFNAG

Sequences:

>Translated_254_residues
MTAPFEGAALVTGGAKRLGAAIVRSLSQAGFPVVIHHRASSGEAEALAAELRAQGGVAHVLAADLADPAAVESLIARAEA
LAGPIGVLVNNASRFEFDSAASVTAASIAAHMAPNLAAPVLLARDMAARIGGRQGVIVNLLDQKLANLNPDFFAYTLSKA
ALAAATEMLAMALAPAVRVCGVAPGLTLIAAKQSEENFRRGQSATPLRRGSQPEDIARAVRFIVETPSVTGTTLYVDAGE
HLMRRQRDVSFNAG
>Mature_253_residues
TAPFEGAALVTGGAKRLGAAIVRSLSQAGFPVVIHHRASSGEAEALAAELRAQGGVAHVLAADLADPAAVESLIARAEAL
AGPIGVLVNNASRFEFDSAASVTAASIAAHMAPNLAAPVLLARDMAARIGGRQGVIVNLLDQKLANLNPDFFAYTLSKAA
LAAATEMLAMALAPAVRVCGVAPGLTLIAAKQSEENFRRGQSATPLRRGSQPEDIARAVRFIVETPSVTGTTLYVDAGEH
LMRRQRDVSFNAG

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=32.7935222672065, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI2367175, Length=239, Percent_Identity=29.2887029288703, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=29.0836653386454, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787891, Length=236, Percent_Identity=22.8813559322034, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115534694, Length=241, Percent_Identity=28.6307053941909, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562910, Length=259, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26167; Mature: 26036

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPFEGAALVTGGAKRLGAAIVRSLSQAGFPVVIHHRASSGEAEALAAELRAQGGVAHV
CCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHH
LAADLADPAAVESLIARAEALAGPIGVLVNNASRFEFDSAASVTAASIAAHMAPNLAAPV
HHHHCCCHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
LLARDMAARIGGRQGVIVNLLDQKLANLNPDFFAYTLSKAALAAATEMLAMALAPAVRVC
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVAPGLTLIAAKQSEENFRRGQSATPLRRGSQPEDIARAVRFIVETPSVTGTTLYVDAGE
CCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCH
HLMRRQRDVSFNAG
HHHHHHHCCCCCCC
>Mature Secondary Structure 
TAPFEGAALVTGGAKRLGAAIVRSLSQAGFPVVIHHRASSGEAEALAAELRAQGGVAHV
CCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHH
LAADLADPAAVESLIARAEALAGPIGVLVNNASRFEFDSAASVTAASIAAHMAPNLAAPV
HHHHCCCHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHH
LLARDMAARIGGRQGVIVNLLDQKLANLNPDFFAYTLSKAALAAATEMLAMALAPAVRVC
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVAPGLTLIAAKQSEENFRRGQSATPLRRGSQPEDIARAVRFIVETPSVTGTTLYVDAGE
CCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCH
HLMRRQRDVSFNAG
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868443 [H]