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The map label for this gene is cydB [H]

Identifier: 148260632

GI number: 148260632

Start: 1803846

End: 1804985

Strand: Reverse

Name: cydB [H]

Synonym: Acry_1634

Alternate gene names: 148260632

Gene position: 1804985-1803846 (Counterclockwise)

Preceding gene: 148260633

Following gene: 148260631

Centisome position: 53.26

GC content: 68.86

Gene sequence:

>1140_bases
ATGGAACTCTATATCGCGCTCAAGGTCATCTGGGCCGTGCTGCTCGGGGTGCTTCTCTCCGGCCTCGGCATCATGGTGGG
GATGGACATGGGGGTCGGCGCGCTGCTGCGCTTCGTCGGCCGCACCGATGCCGAACGCCGCACCGCGCTCGCCGTGATCG
GCCCGCACTGGGACGGCAACCAGGTCTGGTTCATCCTCGGCGGCGGCGCCATCTTCGCCGCCTTCCCGACGCTCTACGCC
ACCTCGTTCTCGACCTTCTACGTGGTGATGATCCTGCTGCTGTTCAGCATGATCATGCGCCCGGTCGCCTTCGAATACCG
CTCCAAGGTCGATGCGCGGCGCTGGCGCGCGACCTGGGACTGGGCGTTCCTGATCTCCGGCGCGCTGCCGATGATCATCT
ACGGCGCCGCCTTCGGCAACGTGCTGCAGGGGGTCGGCTTCCACTTCAGCTGGGACGGCCAGTATTACCAGGATGGCAGC
TTCATCTGGTACCTGCTCAACCCCTTCGCGGTGATGTGCGGCGTGCTCTCGCTCGCCCTCGCCGTGCACCAGGGCGGGGC
GATGCTGATGATCCGCGGCGAGGGCCCGATCGCCGAGCGCGCCCGGCGCTATGCGGTGCCCGCCGGCCTGCTCGCCGCCG
CCCTGTTCGCGATCGGCGGCGTCTGGGTCCGCTTCATCAAGGGCTTCGCCTACACCGCCCCGGTCAACCCGGCGATGCCG
GCGACCCCGCTCGGCGGCCCCGCGGTCGCGATGCGCGCCGGCGCCTGGATGGACAATTTCCACCAGCATCCGGTGCTCTG
GCTGCTGCCGGCGGTGGGCCTGCTCGGCATGGTCGCGGGTCCGCTGGCGCTCGCCGCCCGCAAGCCGATCCTCGGCTGGT
GGCTCGGCGCGCTGGCCTGGATCGGCACGATCTTCACCACCGGGGCGGCGATGTTTCCCTTCCTGATGCCCTCCACCACC
GCGCCGGCGCAGAGCCTGACGGTGTGGAACGCCTCGGGCAGCGCCTACAATCTCGGCTGGATGCTGGCCTTCGCGCTGGT
CTTCGTGCCGATCATCCTGAGCTACACGGCCTGGGCCTTCCGCGTCATGCGCGGGAAGGTCAAGACCGAGTCCGTCATCG
CCAACGATCACTCCTACTGA

Upstream 100 bases:

>100_bases
CGGCGAGCACGCCCATGCCCGTCCGGTCGAGGCGGCGGCCAGCCCGTCGCTGATGCGCCCCGGCTACGCCGACAAGTCCT
GGCAGTAAGGAAACCGCGCC

Downstream 100 bases:

>100_bases
GGAGCGGAGATCGAGCCATGTTGAACACGATCAAATTCGCCGCCCTCGCGGTCATCCTCTTCGCGGCGATCCTGCTCGCC
GTGGTCACCGGCGACGAGGG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGNQVWFILGGGAIFAAFPTLYA
TSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWDWAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGS
FIWYLLNPFAVMCGVLSLALAVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP
ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAWIGTIFTTGAAMFPFLMPSTT
APAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAFRVMRGKVKTESVIANDHSY

Sequences:

>Translated_379_residues
MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGNQVWFILGGGAIFAAFPTLYA
TSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWDWAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGS
FIWYLLNPFAVMCGVLSLALAVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP
ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAWIGTIFTTGAAMFPFLMPSTT
APAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAFRVMRGKVKTESVIANDHSY
>Mature_379_residues
MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGNQVWFILGGGAIFAAFPTLYA
TSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWDWAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGS
FIWYLLNPFAVMCGVLSLALAVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP
ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAWIGTIFTTGAAMFPFLMPSTT
APAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAFRVMRGKVKTESVIANDHSY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=376, Percent_Identity=43.8829787234042, Blast_Score=303, Evalue=1e-83,
Organism=Escherichia coli, GI1787213, Length=381, Percent_Identity=41.994750656168, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41200; Mature: 41200

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGN
CCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHEEEEEECCCCCCC
QVWFILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLAL
HHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCEEEEHHHHHHHHHHHHHHHH
AVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP
HHHCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC
ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAW
CCCCCCCHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IGTIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAF
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RVMRGKVKTESVIANDHSY
HHHHCCCHHHHEECCCCCC
>Mature Secondary Structure
MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGN
CCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHEEEEEECCCCCCC
QVWFILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
WAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLAL
HHHHHHCCHHHHHHHHHHHHHHHHCCCEEEECCCEEECCCEEEEHHHHHHHHHHHHHHHH
AVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP
HHHCCCEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC
ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAW
CCCCCCCHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
IGTIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAF
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RVMRGKVKTESVIANDHSY
HHHHCCCHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]