| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
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The map label for this gene is pdxA1 [H]
Identifier: 148260146
GI number: 148260146
Start: 1272301
End: 1273350
Strand: Reverse
Name: pdxA1 [H]
Synonym: Acry_1142
Alternate gene names: 148260146
Gene position: 1273350-1272301 (Counterclockwise)
Preceding gene: 148260147
Following gene: 148260145
Centisome position: 37.57
GC content: 68.67
Gene sequence:
>1050_bases GTGGCCATTCCGCGTATTGCCGTCACGATGGGGGATCCGGCCGGTGTCGGCCCGGAAATCATCGCGAAGGCTGCCCTGCG CCTGAAGGACCGGATCGAGGCCGGCGAGCTCGCGCTGGTGGTGACGGGGTCCGGCCACCGCCTCGCCGCCGCTTGCGCCG GGTTGGGCATTGCCCAGCCTTTCGCTGCCGTTTCCGCCGATACCCCGCGCGAGGCGCTGCCGCCTTGTGCGCTGGTCGAG GTCGGGCCCGACGCCTCTGCCATCGAGCCGGGCAAGGTTTCGGCCGTCGCGGGCGAAAGCGCCTATCAGGCGATCGCCGC CGGCGTGCGCATGGCGATGGGCGGCCTGGTCGATGCGATCTGCACGGCGCCGATCAACAAGGAGGCGCTCAATCTCGCCG GCCATCATTACAGCGGCCATACCGAGCTGCTTGCCGATCTCACCGCCGCGCGGAATTCGGTGATGATGCTGGCCCATGGC AACATGCGCGTGAGCCATGTCTGCACCCATGTCGCGCTGCGCGACGTGCCGAAGCGCCTCACGCCCGAGCGGCTGCGTCA GGTGGTGGAACTGACAGCGGACGCGCTGAACCGGCTGGGCATCGCCCGCCCGCGGATCGGCATCGCCGCGCTCAATCCGC ATGCCGGCGAGAACGGCCTGTTCGGCCGCGAGGATATCGACATCACCGCCCCCACCGTCGAGGATCTGCGTCGCGCCGGC CACGACGTGACCGGTCCGGTTCCGGGCGACACGATCTTCGTGAAACTGCGGGCCGGCCAGTTCGACGCGGTCGTCGCGAT GTATCACGATCAGGGCCATATTCCGGTGAAGCTGCTGGGCTTTTCGGTCGATCCCACGACCGGCGAATGGCAGGCGCTCA GCGGCGTCAACGTCACGCTCGGCCTGCCGATCATCCGCACGTCGGTCGACCACGGCACGGCGTTCGACATTGCCGGCAAG GGCATCGCCAGCGAGCAGAGCCTGCTGGAAGCCATCGACTACGCGGTGCAACTCGCGCAAGGATCGGACCGGACCGCGCC CTCACCGTAA
Upstream 100 bases:
>100_bases GAACCGAGGCGTTTCAAAATCAATCATAAAACATGATCGTTATTGACACAGAGGCGGCCGCGGCTCATGTTCGCGCCGTC ACGAGACCGGAGGTGCATTG
Downstream 100 bases:
>100_bases CGCAACGACCCGCCACGGCGCGCCGGTCAGGGCGTGCCGATCGATGACAAACGGCCGGACGCGGGCTCTGCCCGGGCGGT CACAAAGGGAGGATAATATT
Product: 4-hydroxythreonine-4-phosphate dehydrogenase
Products: NA
Alternate protein names: 4-(phosphohydroxy)-L-threonine dehydrogenase 1 [H]
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MAIPRIAVTMGDPAGVGPEIIAKAALRLKDRIEAGELALVVTGSGHRLAAACAGLGIAQPFAAVSADTPREALPPCALVE VGPDASAIEPGKVSAVAGESAYQAIAAGVRMAMGGLVDAICTAPINKEALNLAGHHYSGHTELLADLTAARNSVMMLAHG NMRVSHVCTHVALRDVPKRLTPERLRQVVELTADALNRLGIARPRIGIAALNPHAGENGLFGREDIDITAPTVEDLRRAG HDVTGPVPGDTIFVKLRAGQFDAVVAMYHDQGHIPVKLLGFSVDPTTGEWQALSGVNVTLGLPIIRTSVDHGTAFDIAGK GIASEQSLLEAIDYAVQLAQGSDRTAPSP
Sequences:
>Translated_349_residues MAIPRIAVTMGDPAGVGPEIIAKAALRLKDRIEAGELALVVTGSGHRLAAACAGLGIAQPFAAVSADTPREALPPCALVE VGPDASAIEPGKVSAVAGESAYQAIAAGVRMAMGGLVDAICTAPINKEALNLAGHHYSGHTELLADLTAARNSVMMLAHG NMRVSHVCTHVALRDVPKRLTPERLRQVVELTADALNRLGIARPRIGIAALNPHAGENGLFGREDIDITAPTVEDLRRAG HDVTGPVPGDTIFVKLRAGQFDAVVAMYHDQGHIPVKLLGFSVDPTTGEWQALSGVNVTLGLPIIRTSVDHGTAFDIAGK GIASEQSLLEAIDYAVQLAQGSDRTAPSP >Mature_348_residues AIPRIAVTMGDPAGVGPEIIAKAALRLKDRIEAGELALVVTGSGHRLAAACAGLGIAQPFAAVSADTPREALPPCALVEV GPDASAIEPGKVSAVAGESAYQAIAAGVRMAMGGLVDAICTAPINKEALNLAGHHYSGHTELLADLTAARNSVMMLAHGN MRVSHVCTHVALRDVPKRLTPERLRQVVELTADALNRLGIARPRIGIAALNPHAGENGLFGREDIDITAPTVEDLRRAGH DVTGPVPGDTIFVKLRAGQFDAVVAMYHDQGHIPVKLLGFSVDPTTGEWQALSGVNVTLGLPIIRTSVDHGTAFDIAGKG IASEQSLLEAIDYAVQLAQGSDRTAPSP
Specific function: Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP) [H]
COG id: COG1995
COG function: function code H; Pyridoxal phosphate biosynthesis protein
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pdxA family [H]
Homologues:
Organism=Escherichia coli, GI1786237, Length=342, Percent_Identity=36.5497076023392, Blast_Score=200, Evalue=1e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005255 [H]
Pfam domain/function: PF04166 PdxA [H]
EC number: =1.1.1.262 [H]
Molecular weight: Translated: 36184; Mature: 36053
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIPRIAVTMGDPAGVGPEIIAKAALRLKDRIEAGELALVVTGSGHRLAAACAGLGIAQP CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCCCC FAAVSADTPREALPPCALVEVGPDASAIEPGKVSAVAGESAYQAIAAGVRMAMGGLVDAI HHHHCCCCCHHHCCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH CTAPINKEALNLAGHHYSGHTELLADLTAARNSVMMLAHGNMRVSHVCTHVALRDVPKRL HCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC TPERLRQVVELTADALNRLGIARPRIGIAALNPHAGENGLFGREDIDITAPTVEDLRRAG CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEECCCHHHHHHCC HDVTGPVPGDTIFVKLRAGQFDAVVAMYHDQGHIPVKLLGFSVDPTTGEWQALSGVNVTL CCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEECCCEEEE GLPIIRTSVDHGTAFDIAGKGIASEQSLLEAIDYAVQLAQGSDRTAPSP CCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AIPRIAVTMGDPAGVGPEIIAKAALRLKDRIEAGELALVVTGSGHRLAAACAGLGIAQP CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCCCC FAAVSADTPREALPPCALVEVGPDASAIEPGKVSAVAGESAYQAIAAGVRMAMGGLVDAI HHHHCCCCCHHHCCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH CTAPINKEALNLAGHHYSGHTELLADLTAARNSVMMLAHGNMRVSHVCTHVALRDVPKRL HCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC TPERLRQVVELTADALNRLGIARPRIGIAALNPHAGENGLFGREDIDITAPTVEDLRRAG CHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCEECCCHHHHHHCC HDVTGPVPGDTIFVKLRAGQFDAVVAMYHDQGHIPVKLLGFSVDPTTGEWQALSGVNVTL CCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCEEECCCEEEE GLPIIRTSVDHGTAFDIAGKGIASEQSLLEAIDYAVQLAQGSDRTAPSP CCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]