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The map label for this gene is 148260099

Identifier: 148260099

GI number: 148260099

Start: 1217059

End: 1217622

Strand: Reverse

Name: 148260099

Synonym: Acry_1092

Alternate gene names: NA

Gene position: 1217622-1217059 (Counterclockwise)

Preceding gene: 148260100

Following gene: 148260098

Centisome position: 35.93

GC content: 75.71

Gene sequence:

>564_bases
ATGCAGACGCAGCGCGACTGGGCCGCCCTGCTCGCGGCCGCGCAGGCGGGCGACCGCCGCAGCTACGAGGCGCTCCTGCG
GGCCGCGCTGCCCTGGCTGCGCGCCCAGGCGCGGCGCGCTTTCCCCGCCGCCGGCGCCGCCGAATGCGAGGACATCGTGC
AGGACACGCTGCTGGCCCTGCACCGGAACCTCCATCTGTTCGATCCCGCGCGCCCGGCCGAGCCCTTCCTGCGCGGCATC
CTCCGCCTGCGCGGCGCCGACCGGCTGCGCGCCCGGGCCCGCAACCGCGGGCGCGAGACCCCGCTCGACGACCTGCCCGT
AACCTCGCCTTCGCTCGCGACGAACGACATGCAGGAGAGGGCGCTCGATGCCGGGCGCCTCGCCGCGGCGATCGACGCCC
TGCCGCGGCGCGACCGGGACGTGTTGACGATGCTCAAGCTGCGCGAAATGACCCTGGCCGAGGCCGCCGCCGCCACGGGC
ATGACCATCGGCGCGCTGAAGGTCGCCACCCACCGCGCCATCCGCCGGCTGCGCCAGGCGCTGAAGGTGACCGATGCAGA
CTGA

Upstream 100 bases:

>100_bases
CCGCTGCACGGCGGCCTCGGCCCCTGAACGCCCGCGCGCGTTGACACACCGGGCGTGCGCGCGCGTTTACACCGCCTCCG
TCCTCGCGCATCATCCCCTC

Downstream 100 bases:

>100_bases
GGACCTGATCACCGCCCTGGCCGGCGATCTCCGGCCGGTCCGCCGGCTGCCGTCCCCCGCCGGCCTGCTGGCGCGCTGGC
TCGCCGTCACCCTGCCGGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MQTQRDWAALLAAAQAGDRRSYEALLRAALPWLRAQARRAFPAAGAAECEDIVQDTLLALHRNLHLFDPARPAEPFLRGI
LRLRGADRLRARARNRGRETPLDDLPVTSPSLATNDMQERALDAGRLAAAIDALPRRDRDVLTMLKLREMTLAEAAAATG
MTIGALKVATHRAIRRLRQALKVTDAD

Sequences:

>Translated_187_residues
MQTQRDWAALLAAAQAGDRRSYEALLRAALPWLRAQARRAFPAAGAAECEDIVQDTLLALHRNLHLFDPARPAEPFLRGI
LRLRGADRLRARARNRGRETPLDDLPVTSPSLATNDMQERALDAGRLAAAIDALPRRDRDVLTMLKLREMTLAEAAAATG
MTIGALKVATHRAIRRLRQALKVTDAD
>Mature_187_residues
MQTQRDWAALLAAAQAGDRRSYEALLRAALPWLRAQARRAFPAAGAAECEDIVQDTLLALHRNLHLFDPARPAEPFLRGI
LRLRGADRLRARARNRGRETPLDDLPVTSPSLATNDMQERALDAGRLAAAIDALPRRDRDVLTMLKLREMTLAEAAAATG
MTIGALKVATHRAIRRLRQALKVTDAD

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20628; Mature: 20628

Theoretical pI: Translated: 11.50; Mature: 11.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTQRDWAALLAAAQAGDRRSYEALLRAALPWLRAQARRAFPAAGAAECEDIVQDTLLAL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
HRNLHLFDPARPAEPFLRGILRLRGADRLRARARNRGRETPLDDLPVTSPSLATNDMQER
HHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALDAGRLAAAIDALPRRDRDVLTMLKLREMTLAEAAAATGMTIGALKVATHRAIRRLRQA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LKVTDAD
HHHCCCC
>Mature Secondary Structure
MQTQRDWAALLAAAQAGDRRSYEALLRAALPWLRAQARRAFPAAGAAECEDIVQDTLLAL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
HRNLHLFDPARPAEPFLRGILRLRGADRLRARARNRGRETPLDDLPVTSPSLATNDMQER
HHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
ALDAGRLAAAIDALPRRDRDVLTMLKLREMTLAEAAAATGMTIGALKVATHRAIRRLRQA
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LKVTDAD
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA