| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
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The map label for this gene is livM [H]
Identifier: 148260058
GI number: 148260058
Start: 1170838
End: 1171824
Strand: Reverse
Name: livM [H]
Synonym: Acry_1050
Alternate gene names: 148260058
Gene position: 1171824-1170838 (Counterclockwise)
Preceding gene: 148260059
Following gene: 148260057
Centisome position: 34.57
GC content: 66.67
Gene sequence:
>987_bases ATGAGCACTGCACTCGACACCAAGCCGGCCACGCGGCCCGCGCCCTCGATCGGCGGACGCGAGATCTCCGCGGCGATCAT CTGGCTCGCCCTGCTGTTCGTGCCGATCTGGCTGCCGGCCGTCGGCGGCTTCACCGATCTCGCCTCGCGCGTGCTGGTCT ACGCGATGGCCGCGACCGGGCTGAACCTGCTGCTCGGCTACACCGGCGGCCTGTCCTTCGGCCATGCGGCCTATTTCGGC CTCGGCGCCTACGGCACCGGCCTGTTCATCATCCATGTCATTCCCTCGATGCCGCTCGCCCTCATCGCCGGCACGCTGCT CGGCGGCATCGGCGGCATCCTGGTCGGCCCGATGGTGATGAAGCGCAAGGGCATCTACTTCTCGATGATCACCATCGCCT TCGGCCAGATGTTCTACTTCCTCGCGGTGCGCTGGAACACCGTCACCGGCGGCGAGGACGGGCTGACCGGCTTCTCCCGC GTGCCGCTGCATCTCGGCGGCGAAACCATCAATCTCGGCCCGGCGCGCTTCTATTATGTCGTGCTGGCGCTTTTCGCGGT GGTCATGCTCGTCGTCTGGCAGATCCTCCGCTCGCCGATGGGCCATGCCTTCGTCGCCACCCGCGAGAACACCACCCGCC TGCGCTTCCTCGGCGTCGCGGTGGACAAGCAGGTCTGGGTCGCCTTCGCCATCTCGGCCTTCATCACCGCACTCGCCGGC AGCCTGAACGCGATGCTGACCGCCTTCGCCTCGCCGGACGACCTGCAATGGCAGCTCTCCGGCTCCTTCGTCGTCATCTG CGTGCTCGGCGGGATGCGCAGCTTCTGGGGACCGTTCCTCGGCGCCGTGATCTACATCGTCGCGCAGGACTACCTCTCCA GCGTGACCCAGAACTGGATGACCTATATCGGCCTGATCTTCGTCCTGTCGGTGCTGTTCTTCCCGCAGGGCCTGCTCGGC TTCATCAAGGGGAGGGCGCGGTCGTGA
Upstream 100 bases:
>100_bases CCTTCTATCCGGTCGCGCAGGAAGTCGTCATCTACGTCATCATGGCGGTGGTCCTGGTCATCCGCCCCCGCGGCCTGCTC GGCCAGGAAGGTCTGTTCGA
Downstream 100 bases:
>100_bases GCCTTCTGAAACTCGAACATGTCGGCCGCCGCTTCGGCGCGCTGCAGGCGCTGAAGGACATCTCGCTCGCGGTCGAGCCG GGCGAGCTGCGCGCCGTCAT
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein M [H]
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MSTALDTKPATRPAPSIGGREISAAIIWLALLFVPIWLPAVGGFTDLASRVLVYAMAATGLNLLLGYTGGLSFGHAAYFG LGAYGTGLFIIHVIPSMPLALIAGTLLGGIGGILVGPMVMKRKGIYFSMITIAFGQMFYFLAVRWNTVTGGEDGLTGFSR VPLHLGGETINLGPARFYYVVLALFAVVMLVVWQILRSPMGHAFVATRENTTRLRFLGVAVDKQVWVAFAISAFITALAG SLNAMLTAFASPDDLQWQLSGSFVVICVLGGMRSFWGPFLGAVIYIVAQDYLSSVTQNWMTYIGLIFVLSVLFFPQGLLG FIKGRARS
Sequences:
>Translated_328_residues MSTALDTKPATRPAPSIGGREISAAIIWLALLFVPIWLPAVGGFTDLASRVLVYAMAATGLNLLLGYTGGLSFGHAAYFG LGAYGTGLFIIHVIPSMPLALIAGTLLGGIGGILVGPMVMKRKGIYFSMITIAFGQMFYFLAVRWNTVTGGEDGLTGFSR VPLHLGGETINLGPARFYYVVLALFAVVMLVVWQILRSPMGHAFVATRENTTRLRFLGVAVDKQVWVAFAISAFITALAG SLNAMLTAFASPDDLQWQLSGSFVVICVLGGMRSFWGPFLGAVIYIVAQDYLSSVTQNWMTYIGLIFVLSVLFFPQGLLG FIKGRARS >Mature_327_residues STALDTKPATRPAPSIGGREISAAIIWLALLFVPIWLPAVGGFTDLASRVLVYAMAATGLNLLLGYTGGLSFGHAAYFGL GAYGTGLFIIHVIPSMPLALIAGTLLGGIGGILVGPMVMKRKGIYFSMITIAFGQMFYFLAVRWNTVTGGEDGLTGFSRV PLHLGGETINLGPARFYYVVLALFAVVMLVVWQILRSPMGHAFVATRENTTRLRFLGVAVDKQVWVAFAISAFITALAGS LNAMLTAFASPDDLQWQLSGSFVVICVLGGMRSFWGPFLGAVIYIVAQDYLSSVTQNWMTYIGLIFVLSVLFFPQGLLGF IKGRARS
Specific function: Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane [H]
COG id: COG4177
COG function: function code E; ABC-type branched-chain amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=297, Percent_Identity=28.6195286195286, Blast_Score=103, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 - InterPro: IPR021807 [H]
Pfam domain/function: PF02653 BPD_transp_2; PF11862 DUF3382 [H]
EC number: NA
Molecular weight: Translated: 35183; Mature: 35052
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTALDTKPATRPAPSIGGREISAAIIWLALLFVPIWLPAVGGFTDLASRVLVYAMAATG CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LNLLLGYTGGLSFGHAAYFGLGAYGTGLFIIHVIPSMPLALIAGTLLGGIGGILVGPMVM HHHHHHHCCCCCCCHHHHHCCCHHHHHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHH KRKGIYFSMITIAFGQMFYFLAVRWNTVTGGEDGLTGFSRVPLHLGGETINLGPARFYYV HHCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEECCCEEECCHHHHHHH VLALFAVVMLVVWQILRSPMGHAFVATRENTTRLRFLGVAVDKQVWVAFAISAFITALAG HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH SLNAMLTAFASPDDLQWQLSGSFVVICVLGGMRSFWGPFLGAVIYIVAQDYLSSVTQNWM HHHHHHHHCCCCCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TYIGLIFVLSVLFFPQGLLGFIKGRARS HHHHHHHHHHHHHHCHHHHHHHHCCCCC >Mature Secondary Structure STALDTKPATRPAPSIGGREISAAIIWLALLFVPIWLPAVGGFTDLASRVLVYAMAATG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LNLLLGYTGGLSFGHAAYFGLGAYGTGLFIIHVIPSMPLALIAGTLLGGIGGILVGPMVM HHHHHHHCCCCCCCHHHHHCCCHHHHHHHEEHHHCCCHHHHHHHHHHHHHHHHHHHHHHH KRKGIYFSMITIAFGQMFYFLAVRWNTVTGGEDGLTGFSRVPLHLGGETINLGPARFYYV HHCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCEEECCCEEECCHHHHHHH VLALFAVVMLVVWQILRSPMGHAFVATRENTTRLRFLGVAVDKQVWVAFAISAFITALAG HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH SLNAMLTAFASPDDLQWQLSGSFVVICVLGGMRSFWGPFLGAVIYIVAQDYLSSVTQNWM HHHHHHHHCCCCCCCEEEECCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TYIGLIFVLSVLFFPQGLLGFIKGRARS HHHHHHHHHHHHHHCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]