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The map label for this gene is ndoB [H]

Identifier: 148260012

GI number: 148260012

Start: 1112322

End: 1113593

Strand: Reverse

Name: ndoB [H]

Synonym: Acry_1003

Alternate gene names: 148260012

Gene position: 1113593-1112322 (Counterclockwise)

Preceding gene: 148260013

Following gene: 148260011

Centisome position: 32.86

GC content: 65.72

Gene sequence:

>1272_bases
ATGGCGGATGTCGCTTCCCCTGCACTTCGTGACCTCGTGGCCCGGCGCCGCCGCGGCTACATGCTGGAGCGGGATTTCTA
TACCGATCCGGACGTCTTCCGCGCCGATCTCGAGTACATCTTCAACCGGCACTGGATTTTCGTCGGCGTGGAGCCGGATG
TTCCCGAGCCGGGCGACGTGATGACGCTGAAGATCGGCGACAACGACATCCTGATCTGCCGCGACGACGACGGCGCGATC
CACGCCATGCACAATGTCTGCCGGCATCGCGCGGCACGGCTGGTCTCGACCGAGAAGGCGACGGTGGGGCGGCTGGTCTG
CCCGTATCACGCCTGGACCTACGGGCTGGACGGCGCGCTCGTGCATGCCGAGCACATGGGCGAGGATTTCGATCATTCCT
GCCACGGGCTGAAGAAAATCCATCTCCGCTCGCTGGAGGGGCTGCTGTTCGTCTGCCTCGCCGAGGAGCCGCCGGCGGAT
TTCGACGAGATGGCGCGGATCGTCGGGCCATATATAGCGCCGCACGAGATCGCCAACTGCAAGGTGGCCCAGCAGATCGA
CCTGATCGAGGAGGGCAACTGGAAGCTGACGATGGAGAACAACCGCGAGTGCTATCACTGCGCGCTGAACCATCCGGAGC
TGACCACCTCGATCTTCGAGTTCGGCTTCGGCTTCGATGCGCGCGAGGACGACCCGGCGCGCGCGGCGCTGCGGCGGAAC
TATGACGACATGGTCGCGCAGTCGTGCAGCGCCTGGGCGGCGAGCGGGTTTCCCTCCGAGGAGATCGGCCATCTCGACGA
CATGGTCTCGGGATTCCGGATCGGCCGGATGCCGATGGACCGCGATGGCGAATCGCAGACGCTGGACACCAAGGTGGCGA
GCCGGCGCCTGCTCGGCCAGGCCAAGGAGAAGCGGCTCGGCGATCTCTCGTTCCATACCCAGCCGAATTCCTGGCACCAT
TTCATGAGCGACCACATTGTGACCTTCTCGGTGCTGCCGCTCTCGCCGGACCGCACGCTGCTGCGCACCAAGTGGCTGGT
GCATCGCGACGCGATCCAGGGCGTGGATTACGACCTCGAGAACCTGATCCGGGTGTGGCGCGAGACTAATCTGCAGGATG
GCGCGCTGGTCGGCCTCGCGCAGGCGGGGGCGTCGGGCGCCGGCTATGTGCCGGGGCCGTATTCGGCGGAAACCGAAGGC
CAGGTCGAGGCTTTCGCCAACTGGTATGTCCGCCGCATGGCGGCGCATCTCGGGATCGAGCCGGCGCGATGA

Upstream 100 bases:

>100_bases
CGAAATCGTTCTGGCGCGATGTCGCAAAAACGAAAGACGCTGATACACCGAACCGTCACATTCCGTCGCCGGGTTCTGAC
CCTTTTTGAAAGTGAACGCC

Downstream 100 bases:

>100_bases
ACATGACGCCGGCCGAGCGCTGCCGTGCCGCGCGCGACGGCAGCCTGTCCGTCTGGGACCCTGAGGTCGACGACGTGCTG
GTCTGCGTCGATGCGCGGCT

Product: Rieske (2Fe-2S) domain-containing protein

Products: NA

Alternate protein names: Naphthalene 1,2-dioxygenase ISP alpha [H]

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MADVASPALRDLVARRRRGYMLERDFYTDPDVFRADLEYIFNRHWIFVGVEPDVPEPGDVMTLKIGDNDILICRDDDGAI
HAMHNVCRHRAARLVSTEKATVGRLVCPYHAWTYGLDGALVHAEHMGEDFDHSCHGLKKIHLRSLEGLLFVCLAEEPPAD
FDEMARIVGPYIAPHEIANCKVAQQIDLIEEGNWKLTMENNRECYHCALNHPELTTSIFEFGFGFDAREDDPARAALRRN
YDDMVAQSCSAWAASGFPSEEIGHLDDMVSGFRIGRMPMDRDGESQTLDTKVASRRLLGQAKEKRLGDLSFHTQPNSWHH
FMSDHIVTFSVLPLSPDRTLLRTKWLVHRDAIQGVDYDLENLIRVWRETNLQDGALVGLAQAGASGAGYVPGPYSAETEG
QVEAFANWYVRRMAAHLGIEPAR

Sequences:

>Translated_423_residues
MADVASPALRDLVARRRRGYMLERDFYTDPDVFRADLEYIFNRHWIFVGVEPDVPEPGDVMTLKIGDNDILICRDDDGAI
HAMHNVCRHRAARLVSTEKATVGRLVCPYHAWTYGLDGALVHAEHMGEDFDHSCHGLKKIHLRSLEGLLFVCLAEEPPAD
FDEMARIVGPYIAPHEIANCKVAQQIDLIEEGNWKLTMENNRECYHCALNHPELTTSIFEFGFGFDAREDDPARAALRRN
YDDMVAQSCSAWAASGFPSEEIGHLDDMVSGFRIGRMPMDRDGESQTLDTKVASRRLLGQAKEKRLGDLSFHTQPNSWHH
FMSDHIVTFSVLPLSPDRTLLRTKWLVHRDAIQGVDYDLENLIRVWRETNLQDGALVGLAQAGASGAGYVPGPYSAETEG
QVEAFANWYVRRMAAHLGIEPAR
>Mature_422_residues
ADVASPALRDLVARRRRGYMLERDFYTDPDVFRADLEYIFNRHWIFVGVEPDVPEPGDVMTLKIGDNDILICRDDDGAIH
AMHNVCRHRAARLVSTEKATVGRLVCPYHAWTYGLDGALVHAEHMGEDFDHSCHGLKKIHLRSLEGLLFVCLAEEPPADF
DEMARIVGPYIAPHEIANCKVAQQIDLIEEGNWKLTMENNRECYHCALNHPELTTSIFEFGFGFDAREDDPARAALRRNY
DDMVAQSCSAWAASGFPSEEIGHLDDMVSGFRIGRMPMDRDGESQTLDTKVASRRLLGQAKEKRLGDLSFHTQPNSWHHF
MSDHIVTFSVLPLSPDRTLLRTKWLVHRDAIQGVDYDLENLIRVWRETNLQDGALVGLAQAGASGAGYVPGPYSAETEGQ
VEAFANWYVRRMAAHLGIEPAR

Specific function: Component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyzes the incorporation of both atoms of molecular oxygen into naphthalene to form cis- naphthalene dihydrodiol [H]

COG id: COG4638

COG function: function code PR; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1788103, Length=211, Percent_Identity=28.9099526066351, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1788888, Length=219, Percent_Identity=28.7671232876712, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017941
- InterPro:   IPR015881
- InterPro:   IPR015879
- InterPro:   IPR001663 [H]

Pfam domain/function: PF00355 Rieske; PF00848 Ring_hydroxyl_A [H]

EC number: =1.14.12.12 [H]

Molecular weight: Translated: 47684; Mature: 47553

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVASPALRDLVARRRRGYMLERDFYTDPDVFRADLEYIFNRHWIFVGVEPDVPEPGDV
CCCCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCE
MTLKIGDNDILICRDDDGAIHAMHNVCRHRAARLVSTEKATVGRLVCPYHAWTYGLDGAL
EEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEECCCHHHHCCCCCEE
VHAEHMGEDFDHSCHGLKKIHLRSLEGLLFVCLAEEPPADFDEMARIVGPYIAPHEIANC
EEHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCCCHHHCCC
KVAQQIDLIEEGNWKLTMENNRECYHCALNHPELTTSIFEFGFGFDAREDDPARAALRRN
HHHHHHHHEECCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCC
YDDMVAQSCSAWAASGFPSEEIGHLDDMVSGFRIGRMPMDRDGESQTLDTKVASRRLLGQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEECCCCCCCCCCCCHHHHHHHHHHHHHH
AKEKRLGDLSFHTQPNSWHHFMSDHIVTFSVLPLSPDRTLLRTKWLVHRDAIQGVDYDLE
HHHHHCCCCEEECCCCCHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH
NLIRVWRETNLQDGALVGLAQAGASGAGYVPGPYSAETEGQVEAFANWYVRRMAAHLGIE
HHHHHHHHCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PAR
CCC
>Mature Secondary Structure 
ADVASPALRDLVARRRRGYMLERDFYTDPDVFRADLEYIFNRHWIFVGVEPDVPEPGDV
CCCCCHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCE
MTLKIGDNDILICRDDDGAIHAMHNVCRHRAARLVSTEKATVGRLVCPYHAWTYGLDGAL
EEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEECCCHHHHCCCCCEE
VHAEHMGEDFDHSCHGLKKIHLRSLEGLLFVCLAEEPPADFDEMARIVGPYIAPHEIANC
EEHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCCCCCHHHCCC
KVAQQIDLIEEGNWKLTMENNRECYHCALNHPELTTSIFEFGFGFDAREDDPARAALRRN
HHHHHHHHEECCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCC
YDDMVAQSCSAWAASGFPSEEIGHLDDMVSGFRIGRMPMDRDGESQTLDTKVASRRLLGQ
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEECCCCCCCCCCCCHHHHHHHHHHHHHH
AKEKRLGDLSFHTQPNSWHHFMSDHIVTFSVLPLSPDRTLLRTKWLVHRDAIQGVDYDLE
HHHHHCCCCEEECCCCCHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHH
NLIRVWRETNLQDGALVGLAQAGASGAGYVPGPYSAETEGQVEAFANWYVRRMAAHLGIE
HHHHHHHHCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
PAR
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA