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The map label for this gene is yncD [C]

Identifier: 148259907

GI number: 148259907

Start: 988630

End: 990957

Strand: Reverse

Name: yncD [C]

Synonym: Acry_0896

Alternate gene names: 148259907

Gene position: 990957-988630 (Counterclockwise)

Preceding gene: 148259908

Following gene: 148259904

Centisome position: 29.24

GC content: 66.84

Gene sequence:

>2328_bases
ATGATCCGCCGCCTGACGTTCTGCCTCCCTTTGCTCGGCGCCTTCGCGCCGGCTGCCCTTGCCCAGGTCGTGCCTTCCGC
ATCCATCGTGCGGGTGCCACGCGTTAACGTCATCGCCGCAACCCCCCTGCCCGGCTCGGCGATCAGCCGCGACAGGCTGC
CCCAGGCCACCCATGTGCTCGGCCCGGCCGAGATCGACCGCACCGGGATTCCGAGCCTGACCGGCGCCATCCTCGCCGCG
GTGCCGAGCGCCTCGATCAACGATGTCGATGGCAACTCGTTCCAGCCGGACATCAACTTCCACGGCTTCACCGCCTCGCC
GGTCACCGGCACGGCGGAAGGCGTCGCCGTCTATCTCGACGGCATGCGCTTCAACGATCCGTTCGGCGACACGGTGAACT
GGGACCTGATCCCGCCCGAGGCGATCCGCAGCGCCAGCCTCCAGCCGGCCAACCCCGCCTTCGGGCTGAACGCGCTCGGC
GGCGCGCTCGATGTCACGCTCAAGAACGGCTTCACCGCGCCGGGCGGCGTGGTCACGCTCTCCGGCGGCTCCTATGGCAG
GATGGCGGGCAGCCTCGAATATGGCGTGCATCATGGCGGCACCGCCGCCTATCTCGCCGCCGACGTGATCCACGATTCCG
GCTTCCGCCAGACCCAGACCTCCCGCCTCGCCCGGATCTATGCCGATCTCGGCTGGCGCAACGCGCGCACCGAACTGCAT
CTCGGCGTCATCGCCGCCGACAACGCGCTCGGCAATCCCGGCGCAACCCCGGTGCAGGCGCTGAACTACGACATCGCCAG
CATCTTCTCCGGCCCCAACACCGTCTACAACAAATACATCGCCACCCGCGCCACCGCGCGCTACGCGCTGAACGGCGACA
CCGCGCTCGACGCGCTGGCCTATTTCGCCGATCTCTCGCAGCGCCTGCCGAACGGCGTGACGGAAGAACTCGCCGCCTGC
CCCGGCCAGCCCGGCATCCTCTGCAACGCCGGCACGAGCGACGTGGTGACGACGCGTGGCGGTGCGGCGGTGCCCGACTT
TCTCAATGGCGGGATCTATTCCGGCCTCGTCAATGAAGGGATCGACCAGCAGGCCTATGGCGCCTCGGTGCAGCTCATCA
ACGACAGCCGGCTGCTGCGCCACCCCAACCACCTGACGATCGGCGCGAGCTTCGACGGCTCGAACACGATGTTCAACGCC
TTCACCCAGATCGGCGGCATCACACCGGTGACGCATCTCTTTATCGGCCCGGGGGTGACGGTCGACCAGCCGGCCGATGG
CGTCAACCCGGTGCAGGTCGCCACGACGACGCGCTATTTCGGCCTCTTCTTCAACGACGTCTTCACCCTCGCGCCCCGGC
TCGACCTCACCCTCGCCGGGCGCTTCAACAATGCCGAGATCGACCTCGCGGACAAGCTCGGCGGCCCGGTCTCCGGCCAT
CACGCCTATGACCGGTTCAACCCGCAAATCGGCCTGACCTGGCACGCGCTCAAGACGCTCGACCTCTATGGCAGCGTCGA
CGAGACCAACCGCAACCCGACGCCAACCGAACTCTCCTGCGCCAGCGCCGCCAACCCGTGCTCGCTGCTGAACTTCTTCG
TCGGCGATCCGAACCTGAAACAGGTCGTCGCCCGCACCTTCGAACTCGGCGCCCGCTTCCACCTCGCCCGCTTCGCCGGC
GGCACGCTGCGCTGGAACGTCGACCTTTTCCGCACCGACGTTCACGATGACATCATTTATCAGTCGACCCTCTACAACCC
CAATCTCCAATACTACACCAACAGCGGCAACACGCGCCGTCAGGGAATCGAGGCCAATCTCGTCTACGCGACGCCGAGGC
TGAACCTGCGCCTGGGCTTCGCGCATATCGACGCGACGTTCCAGAACGCGCTGACACTGAACAGCCCCTCCAACCCCGCC
GCCGATGCGAACGGCGAGATCCACGTCGTCCCCGGCGACCGCATCCCCGGCATCCCGGCCAATCGCGGCACGATCGACCT
GTCCTACCAGCTCACCGAACGTCTGCTGCTCGGCACTACCGCGATCCTGCAATCGAGCCAGTACCGCTTCGGCGACGAGG
CGAACCTGACGAAACCCGTTGGCGGCTACGCGGTGTTCAACGTCTATGCCTCCTACAAGCTCACTCCGCGCGTCACCGTC
TTCGCCATGGTCGATAACGTGACAAACCGCTCCTACCAGACCTATGGCGGGTTCGGCCCGGTCTCCGACGTGCCGTGGAA
TTTCGTCCCCGGCGGCGTCACCGATCCGCGCACCGCCAATCCCGGCCGCCCGATCGCCGGCTATGGCGGCGTCAGGATGA
CGTTCTGA

Upstream 100 bases:

>100_bases
GAGGTGGCGGTGCGGTCTTCACCGTTCCATCGCCATCCCGACTGACCGGCGAGATGCGCCCGGATCATTCGGATTGTCGC
AGACATCGGAGTGCCACCGC

Downstream 100 bases:

>100_bases
TCCGCCTCTTCTCTCCCGCAATCCCGCCTCGGTCCGGCAGGGTCGGGGCGGATTTTTTTTGCGGCCGGCGTCAGCCCGCG
ATCCGGCCCGGCTGGAAAAG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor YncD; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; NB-Dependent Siderophore Receptor; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; Ferrienterobactin-Like Protein; Ferrisiderophore Receptor Protein; Outer Membrane Receptor nB Dependent; Outer Membrane Receptor Protein Mostly Fe Transport; NB-Dependent Receptor Domain Protein

Number of amino acids: Translated: 775; Mature: 775

Protein sequence:

>775_residues
MIRRLTFCLPLLGAFAPAALAQVVPSASIVRVPRVNVIAATPLPGSAISRDRLPQATHVLGPAEIDRTGIPSLTGAILAA
VPSASINDVDGNSFQPDINFHGFTASPVTGTAEGVAVYLDGMRFNDPFGDTVNWDLIPPEAIRSASLQPANPAFGLNALG
GALDVTLKNGFTAPGGVVTLSGGSYGRMAGSLEYGVHHGGTAAYLAADVIHDSGFRQTQTSRLARIYADLGWRNARTELH
LGVIAADNALGNPGATPVQALNYDIASIFSGPNTVYNKYIATRATARYALNGDTALDALAYFADLSQRLPNGVTEELAAC
PGQPGILCNAGTSDVVTTRGGAAVPDFLNGGIYSGLVNEGIDQQAYGASVQLINDSRLLRHPNHLTIGASFDGSNTMFNA
FTQIGGITPVTHLFIGPGVTVDQPADGVNPVQVATTTRYFGLFFNDVFTLAPRLDLTLAGRFNNAEIDLADKLGGPVSGH
HAYDRFNPQIGLTWHALKTLDLYGSVDETNRNPTPTELSCASAANPCSLLNFFVGDPNLKQVVARTFELGARFHLARFAG
GTLRWNVDLFRTDVHDDIIYQSTLYNPNLQYYTNSGNTRRQGIEANLVYATPRLNLRLGFAHIDATFQNALTLNSPSNPA
ADANGEIHVVPGDRIPGIPANRGTIDLSYQLTERLLLGTTAILQSSQYRFGDEANLTKPVGGYAVFNVYASYKLTPRVTV
FAMVDNVTNRSYQTYGGFGPVSDVPWNFVPGGVTDPRTANPGRPIAGYGGVRMTF

Sequences:

>Translated_775_residues
MIRRLTFCLPLLGAFAPAALAQVVPSASIVRVPRVNVIAATPLPGSAISRDRLPQATHVLGPAEIDRTGIPSLTGAILAA
VPSASINDVDGNSFQPDINFHGFTASPVTGTAEGVAVYLDGMRFNDPFGDTVNWDLIPPEAIRSASLQPANPAFGLNALG
GALDVTLKNGFTAPGGVVTLSGGSYGRMAGSLEYGVHHGGTAAYLAADVIHDSGFRQTQTSRLARIYADLGWRNARTELH
LGVIAADNALGNPGATPVQALNYDIASIFSGPNTVYNKYIATRATARYALNGDTALDALAYFADLSQRLPNGVTEELAAC
PGQPGILCNAGTSDVVTTRGGAAVPDFLNGGIYSGLVNEGIDQQAYGASVQLINDSRLLRHPNHLTIGASFDGSNTMFNA
FTQIGGITPVTHLFIGPGVTVDQPADGVNPVQVATTTRYFGLFFNDVFTLAPRLDLTLAGRFNNAEIDLADKLGGPVSGH
HAYDRFNPQIGLTWHALKTLDLYGSVDETNRNPTPTELSCASAANPCSLLNFFVGDPNLKQVVARTFELGARFHLARFAG
GTLRWNVDLFRTDVHDDIIYQSTLYNPNLQYYTNSGNTRRQGIEANLVYATPRLNLRLGFAHIDATFQNALTLNSPSNPA
ADANGEIHVVPGDRIPGIPANRGTIDLSYQLTERLLLGTTAILQSSQYRFGDEANLTKPVGGYAVFNVYASYKLTPRVTV
FAMVDNVTNRSYQTYGGFGPVSDVPWNFVPGGVTDPRTANPGRPIAGYGGVRMTF
>Mature_775_residues
MIRRLTFCLPLLGAFAPAALAQVVPSASIVRVPRVNVIAATPLPGSAISRDRLPQATHVLGPAEIDRTGIPSLTGAILAA
VPSASINDVDGNSFQPDINFHGFTASPVTGTAEGVAVYLDGMRFNDPFGDTVNWDLIPPEAIRSASLQPANPAFGLNALG
GALDVTLKNGFTAPGGVVTLSGGSYGRMAGSLEYGVHHGGTAAYLAADVIHDSGFRQTQTSRLARIYADLGWRNARTELH
LGVIAADNALGNPGATPVQALNYDIASIFSGPNTVYNKYIATRATARYALNGDTALDALAYFADLSQRLPNGVTEELAAC
PGQPGILCNAGTSDVVTTRGGAAVPDFLNGGIYSGLVNEGIDQQAYGASVQLINDSRLLRHPNHLTIGASFDGSNTMFNA
FTQIGGITPVTHLFIGPGVTVDQPADGVNPVQVATTTRYFGLFFNDVFTLAPRLDLTLAGRFNNAEIDLADKLGGPVSGH
HAYDRFNPQIGLTWHALKTLDLYGSVDETNRNPTPTELSCASAANPCSLLNFFVGDPNLKQVVARTFELGARFHLARFAG
GTLRWNVDLFRTDVHDDIIYQSTLYNPNLQYYTNSGNTRRQGIEANLVYATPRLNLRLGFAHIDATFQNALTLNSPSNPA
ADANGEIHVVPGDRIPGIPANRGTIDLSYQLTERLLLGTTAILQSSQYRFGDEANLTKPVGGYAVFNVYASYKLTPRVTV
FAMVDNVTNRSYQTYGGFGPVSDVPWNFVPGGVTDPRTANPGRPIAGYGGVRMTF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82387; Mature: 82387

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRLTFCLPLLGAFAPAALAQVVPSASIVRVPRVNVIAATPLPGSAISRDRLPQATHVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCCCCHHCCCCHHHCC
GPAEIDRTGIPSLTGAILAAVPSASINDVDGNSFQPDINFHGFTASPVTGTAEGVAVYLD
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEE
GMRFNDPFGDTVNWDLIPPEAIRSASLQPANPAFGLNALGGALDVTLKNGFTAPGGVVTL
CEEECCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCCCEEEE
SGGSYGRMAGSLEYGVHHGGTAAYLAADVIHDSGFRQTQTSRLARIYADLGWRNARTELH
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
LGVIAADNALGNPGATPVQALNYDIASIFSGPNTVYNKYIATRATARYALNGDTALDALA
EEEEEECCCCCCCCCCCHHHHCCCHHHHHCCCHHHHHHHHHHHCEEEEEECCCHHHHHHH
YFADLSQRLPNGVTEELAACPGQPGILCNAGTSDVVTTRGGAAVPDFLNGGIYSGLVNEG
HHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCHHHCCCHHHHHHHCC
IDQQAYGASVQLINDSRLLRHPNHLTIGASFDGSNTMFNAFTQIGGITPVTHLFIGPGVT
CCCCCCCCEEEEECCCHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHEEECCCCC
VDQPADGVNPVQVATTTRYFGLFFNDVFTLAPRLDLTLAGRFNNAEIDLADKLGGPVSGH
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEHHHCCCCCCCC
HAYDRFNPQIGLTWHALKTLDLYGSVDETNRNPTPTELSCASAANPCSLLNFFVGDPNLK
CCHHHCCCCCCEEEHHEEEEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCCCHH
QVVARTFELGARFHLARFAGGTLRWNVDLFRTDVHDDIIYQSTLYNPNLQYYTNSGNTRR
HHHHHHHHHCCCEEEHHHCCCEEEEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCHH
QGIEANLVYATPRLNLRLGFAHIDATFQNALTLNSPSNPAADANGEIHVVPGDRIPGIPA
CCCEEEEEEECCCEEEEEEEEEECHHHHCEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
NRGTIDLSYQLTERLLLGTTAILQSSQYRFGDEANLTKPVGGYAVFNVYASYKLTPRVTV
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEE
FAMVDNVTNRSYQTYGGFGPVSDVPWNFVPGGVTDPRTANPGRPIAGYGGVRMTF
EEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECC
>Mature Secondary Structure
MIRRLTFCLPLLGAFAPAALAQVVPSASIVRVPRVNVIAATPLPGSAISRDRLPQATHVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCCCCHHCCCCHHHCC
GPAEIDRTGIPSLTGAILAAVPSASINDVDGNSFQPDINFHGFTASPVTGTAEGVAVYLD
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEE
GMRFNDPFGDTVNWDLIPPEAIRSASLQPANPAFGLNALGGALDVTLKNGFTAPGGVVTL
CEEECCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCCCCCCEEEE
SGGSYGRMAGSLEYGVHHGGTAAYLAADVIHDSGFRQTQTSRLARIYADLGWRNARTELH
CCCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
LGVIAADNALGNPGATPVQALNYDIASIFSGPNTVYNKYIATRATARYALNGDTALDALA
EEEEEECCCCCCCCCCCHHHHCCCHHHHHCCCHHHHHHHHHHHCEEEEEECCCHHHHHHH
YFADLSQRLPNGVTEELAACPGQPGILCNAGTSDVVTTRGGAAVPDFLNGGIYSGLVNEG
HHHHHHHHCCCCHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCHHHCCCHHHHHHHCC
IDQQAYGASVQLINDSRLLRHPNHLTIGASFDGSNTMFNAFTQIGGITPVTHLFIGPGVT
CCCCCCCCEEEEECCCHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHEEECCCCC
VDQPADGVNPVQVATTTRYFGLFFNDVFTLAPRLDLTLAGRFNNAEIDLADKLGGPVSGH
CCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEHHHCCCCCCCC
HAYDRFNPQIGLTWHALKTLDLYGSVDETNRNPTPTELSCASAANPCSLLNFFVGDPNLK
CCHHHCCCCCCEEEHHEEEEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHCCCCCHH
QVVARTFELGARFHLARFAGGTLRWNVDLFRTDVHDDIIYQSTLYNPNLQYYTNSGNTRR
HHHHHHHHHCCCEEEHHHCCCEEEEEEEEEEECCCCCCEEEEEECCCCEEEEECCCCCHH
QGIEANLVYATPRLNLRLGFAHIDATFQNALTLNSPSNPAADANGEIHVVPGDRIPGIPA
CCCEEEEEEECCCEEEEEEEEEECHHHHCEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
NRGTIDLSYQLTERLLLGTTAILQSSQYRFGDEANLTKPVGGYAVFNVYASYKLTPRVTV
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEE
FAMVDNVTNRSYQTYGGFGPVSDVPWNFVPGGVTDPRTANPGRPIAGYGGVRMTF
EEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA