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The map label for this gene is xpsD [H]

Identifier: 148259896

GI number: 148259896

Start: 975769

End: 978039

Strand: Reverse

Name: xpsD [H]

Synonym: Acry_0885

Alternate gene names: 148259896

Gene position: 978039-975769 (Counterclockwise)

Preceding gene: 148259897

Following gene: 148259895

Centisome position: 28.86

GC content: 71.95

Gene sequence:

>2271_bases
ATGCGCGCCCGTGTCCATGCCGGCGTCCTCACGGCAGCCGCCCTGCTCGCCGGGTGCACCCCACGCCCGCTGCCGCCCAG
CGCCACCCGCCTGCTCGCCCCCGCAGCCGCCGCGACATCGGCCACCGCCACCATTCCGGGCCGCGCCGACGCCGTGATCG
CCACCCCACCCGTCACCGGCGCGATCACCGCGAGCCCCGGCCACGCGCCGCCCGCAAGCGCCCCCGGCGCGCCGCTACCC
GCCGGCAGCGGCGATGTCTCGCTCGACTTCGCCGATACCGACATCCGCGCCGTCGTCGCCCAGATCCTCGGCAACATGCT
GCACGTCACCTACACGATCGACCCGGCGGTGCAGGGCAAGGCGACGCTGCGCACGGCGCACGACATCCCCGCCTCCGCCC
TGATCCCGACGCTGCAAACCCTGCTCGCGCAGAACCACGCCGCCCTCATCCGCAGCAACGGGCTCTACCAGGTCGTCCCG
GCCGACAAGGCGGCGGCCGCCCTCGCCACCGCGCCGGGGCTCGACGGATCAAGCGTCTTCACCCTCACCCATGTCAGCGC
GGCGCATCTCGCCGCCGTGCTGCAACCCTATGTCGGCAAGGGCGGAAAGGTGATCGCCGAGCCGGACCGCAACGCCCTCA
TCGTCGAAGGCGATCCGCAGGTCCGCGCCACCCTGCTCGCGCTGATCCGCGCCTTCGACGTCGATGCCCTCGCCGGCCAG
TCCTACGCGCTCTACCCCGCCACCGGCGCCAACGCGCGCGATTTCGCCACCGCCCTGACCCAGGCGCTGCACGCCGGCAA
GGCGGGCGGCGTGGTCAAGGTGGTCCCGCTGGTGCGCATCGGCGCCGTTCTGGTGATCGCCCCCTCCGGCGCCGCCATCC
GCGCGGCGGACCGGGTCTATCGCACCCTCGCCCGGCAGGAAGCGGCGACGCACCGGGCCTGGCACGTCTATTACCTGCGC
AACAGCCGCGCCGGGGACGTCGCCGAGGTGTTGCAGGAAGCCTTCACCCCCAACGACGTGACGGCCCAGCCCTCGGCGTC
CGACACCACGGGCAACACCGCCCCCGGCGTCTCGGCGCAGACGCTGATGGGATCGGGCGGGTTGGTGGGCAACGCGGCCG
GCACCTCCGGCACCGGCACCACCGCCGGGCTCGGCGCCGCCCCCGGCACCAGCAGTTCCACCGCCTCCGGTCTCGGCGCA
GGCCTCGCATCCCCCGCCGCCTCGCCCGCCGCATCACCCGCATCGTCCCACGCGGCGGCGAGCAATCCGCTGCTCGGTCC
GCTCGGCGGCAGCGCGGGCGGCGGCGGCGATTCAAGCGGCCTCAGGATCATCCCCGATCCCCGCCAGAACGCGATCCTGG
TGCGGGCGGACGCCTCGGAAAACGCCTCGGTTGAGGCGATGCTCCGCAAGCTCGACATCGAGCCGCTGGAAGTCGAGATC
GACGCGACGATCGCCGAGGTCGATCTCAACGGCGCGCTGAAATACGGCACCCAGTTCTTCTTCAAGTCCGGCGGCATCAA
CGCGGTGCTCAGCACCGGCACCACCGCGGCGCTGAACCAGAGCTTCCCCGGCTTCGTCCTCGCCGGCCATGGAGCCGACG
GCGCCCCGCTCGCGATCTCCGCCCTGCAATCGGTCACCCAGGTGCAGGTGCTCTCCTCGCCGCAGCTCCTCGTGCAGAAC
GGCCGCACCGCGAACCTGCTGGTCGGCAATCTCGTGCCCTATCTCTCGCAGACCTCGCAGAGCACGCTGACCACCGGCGC
GCCGGTCATCAACTCGGTGAACTACCAGGAAACCGGCGTGATCCTGCAGATCACCCCCCATATCTCCAGCGACGGGCTGG
TGGCGCTCACGGTCTCGCAGCAGGTGAGCAACGTCGCCCCCTCGGTCACCACCCAGGGGCTGAACTCGCCGACCTTCTCC
GAACGCGCCGTCTCCTCCAGCGTCGTCGTGCATGACGGGCAGACGATCGGCCTCGCCGGGCTGATCACCGACAATGTCCA
GCGCGGCAATTCCGGCCTGCCCTTCCTCAAGGACGTGCCGCTGCTCGGCCCGCTCTTCGGCACGCAGGACAACAGCCGCG
CGCGGCAGGAGCTGCTGGTGCTGATCACCCCGCACGTCGTCCACGACGCGACCGATGCTGCGGCGCTGACAAGCGACCTC
GAACAGGCGCTGCCCAACGCCGCCAACGTGCCCGCCGAACTCAACGGCCTGCCGATGGACGGATCGGCCGATCCGCAAGC
GGCGCTGCGCCGGCGTCTCGGGCTGCACTGA

Upstream 100 bases:

>100_bases
CCGGCGCGGCACCGCCCGCCATCCCGCCGAAGCCGGCCGCCGAAGCCGGCATCCTTGTCCATCCCGGCCCCCGATAAATC
CCAGGAGATCGAGCGAAACC

Downstream 100 bases:

>100_bases
GCATGGCGCGGCCCCGCCGGCACGACGACCGCGGCTTCGCGCTGCTGATCGTGCTGGCGGTGCTGGTGCTGTTCGGCTTC
CTCGTCACCCGGCTGCTGGT

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 756; Mature: 756

Protein sequence:

>756_residues
MRARVHAGVLTAAALLAGCTPRPLPPSATRLLAPAAAATSATATIPGRADAVIATPPVTGAITASPGHAPPASAPGAPLP
AGSGDVSLDFADTDIRAVVAQILGNMLHVTYTIDPAVQGKATLRTAHDIPASALIPTLQTLLAQNHAALIRSNGLYQVVP
ADKAAAALATAPGLDGSSVFTLTHVSAAHLAAVLQPYVGKGGKVIAEPDRNALIVEGDPQVRATLLALIRAFDVDALAGQ
SYALYPATGANARDFATALTQALHAGKAGGVVKVVPLVRIGAVLVIAPSGAAIRAADRVYRTLARQEAATHRAWHVYYLR
NSRAGDVAEVLQEAFTPNDVTAQPSASDTTGNTAPGVSAQTLMGSGGLVGNAAGTSGTGTTAGLGAAPGTSSSTASGLGA
GLASPAASPAASPASSHAAASNPLLGPLGGSAGGGGDSSGLRIIPDPRQNAILVRADASENASVEAMLRKLDIEPLEVEI
DATIAEVDLNGALKYGTQFFFKSGGINAVLSTGTTAALNQSFPGFVLAGHGADGAPLAISALQSVTQVQVLSSPQLLVQN
GRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFS
ERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVVHDATDAAALTSDL
EQALPNAANVPAELNGLPMDGSADPQAALRRRLGLH

Sequences:

>Translated_756_residues
MRARVHAGVLTAAALLAGCTPRPLPPSATRLLAPAAAATSATATIPGRADAVIATPPVTGAITASPGHAPPASAPGAPLP
AGSGDVSLDFADTDIRAVVAQILGNMLHVTYTIDPAVQGKATLRTAHDIPASALIPTLQTLLAQNHAALIRSNGLYQVVP
ADKAAAALATAPGLDGSSVFTLTHVSAAHLAAVLQPYVGKGGKVIAEPDRNALIVEGDPQVRATLLALIRAFDVDALAGQ
SYALYPATGANARDFATALTQALHAGKAGGVVKVVPLVRIGAVLVIAPSGAAIRAADRVYRTLARQEAATHRAWHVYYLR
NSRAGDVAEVLQEAFTPNDVTAQPSASDTTGNTAPGVSAQTLMGSGGLVGNAAGTSGTGTTAGLGAAPGTSSSTASGLGA
GLASPAASPAASPASSHAAASNPLLGPLGGSAGGGGDSSGLRIIPDPRQNAILVRADASENASVEAMLRKLDIEPLEVEI
DATIAEVDLNGALKYGTQFFFKSGGINAVLSTGTTAALNQSFPGFVLAGHGADGAPLAISALQSVTQVQVLSSPQLLVQN
GRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFS
ERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVVHDATDAAALTSDL
EQALPNAANVPAELNGLPMDGSADPQAALRRRLGLH
>Mature_756_residues
MRARVHAGVLTAAALLAGCTPRPLPPSATRLLAPAAAATSATATIPGRADAVIATPPVTGAITASPGHAPPASAPGAPLP
AGSGDVSLDFADTDIRAVVAQILGNMLHVTYTIDPAVQGKATLRTAHDIPASALIPTLQTLLAQNHAALIRSNGLYQVVP
ADKAAAALATAPGLDGSSVFTLTHVSAAHLAAVLQPYVGKGGKVIAEPDRNALIVEGDPQVRATLLALIRAFDVDALAGQ
SYALYPATGANARDFATALTQALHAGKAGGVVKVVPLVRIGAVLVIAPSGAAIRAADRVYRTLARQEAATHRAWHVYYLR
NSRAGDVAEVLQEAFTPNDVTAQPSASDTTGNTAPGVSAQTLMGSGGLVGNAAGTSGTGTTAGLGAAPGTSSSTASGLGA
GLASPAASPAASPASSHAAASNPLLGPLGGSAGGGGDSSGLRIIPDPRQNAILVRADASENASVEAMLRKLDIEPLEVEI
DATIAEVDLNGALKYGTQFFFKSGGINAVLSTGTTAALNQSFPGFVLAGHGADGAPLAISALQSVTQVQVLSSPQLLVQN
GRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFS
ERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVVHDATDAAALTSDL
EQALPNAANVPAELNGLPMDGSADPQAALRRRLGLH

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=658, Percent_Identity=23.8601823708207, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI1789793, Length=270, Percent_Identity=24.4444444444444, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 75943; Mature: 75943

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRARVHAGVLTAAALLAGCTPRPLPPSATRLLAPAAAATSATATIPGRADAVIATPPVTG
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHCCCEEECCCCCCEEEECCCCCE
AITASPGHAPPASAPGAPLPAGSGDVSLDFADTDIRAVVAQILGNMLHVTYTIDPAVQGK
EEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCCCC
ATLRTAHDIPASALIPTLQTLLAQNHAALIRSNGLYQVVPADKAAAALATAPGLDGSSVF
EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHCCCCCCCCEE
TLTHVSAAHLAAVLQPYVGKGGKVIAEPDRNALIVEGDPQVRATLLALIRAFDVDALAGQ
EEEHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCHHHCCC
SYALYPATGANARDFATALTQALHAGKAGGVVKVVPLVRIGAVLVIAPSGAAIRAADRVY
CEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCEEEEECCCCCCHHHHHHHH
RTLARQEAATHRAWHVYYLRNSRAGDVAEVLQEAFTPNDVTAQPSASDTTGNTAPGVSAQ
HHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
TLMGSGGLVGNAAGTSGTGTTAGLGAAPGTSSSTASGLGAGLASPAASPAASPASSHAAA
HEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
SNPLLGPLGGSAGGGGDSSGLRIIPDPRQNAILVRADASENASVEAMLRKLDIEPLEVEI
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
DATIAEVDLNGALKYGTQFFFKSGGINAVLSTGTTAALNQSFPGFVLAGHGADGAPLAIS
EEEEEEEECCCHHHHCCEEEEECCCCEEEEECCCCHHHCCCCCCEEEECCCCCCCHHHHH
ALQSVTQVQVLSSPQLLVQNGRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQETGV
HHHHHHHHHHHCCCHHEEECCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCE
ILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFSERAVSSSVVVHDGQTIGLAG
EEEEECCCCCCCEEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEECCCEEEEEE
LITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVVHDATDAAALTSDL
EEECCHHCCCCCCCHHHCCCCCCCCCCCCCCCHHHEEEEEEECCHHHHCCHHHHHHHHHH
EQALPNAANVPAELNGLPMDGSADPQAALRRRLGLH
HHHCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MRARVHAGVLTAAALLAGCTPRPLPPSATRLLAPAAAATSATATIPGRADAVIATPPVTG
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHCCCEEECCCCCCEEEECCCCCE
AITASPGHAPPASAPGAPLPAGSGDVSLDFADTDIRAVVAQILGNMLHVTYTIDPAVQGK
EEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEEEECCCCCCC
ATLRTAHDIPASALIPTLQTLLAQNHAALIRSNGLYQVVPADKAAAALATAPGLDGSSVF
EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCHHHHHHHHCCCCCCCCEE
TLTHVSAAHLAAVLQPYVGKGGKVIAEPDRNALIVEGDPQVRATLLALIRAFDVDALAGQ
EEEHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHCCHHHCCC
SYALYPATGANARDFATALTQALHAGKAGGVVKVVPLVRIGAVLVIAPSGAAIRAADRVY
CEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCEEEEECCCCCCHHHHHHHH
RTLARQEAATHRAWHVYYLRNSRAGDVAEVLQEAFTPNDVTAQPSASDTTGNTAPGVSAQ
HHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
TLMGSGGLVGNAAGTSGTGTTAGLGAAPGTSSSTASGLGAGLASPAASPAASPASSHAAA
HEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
SNPLLGPLGGSAGGGGDSSGLRIIPDPRQNAILVRADASENASVEAMLRKLDIEPLEVEI
CCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEE
DATIAEVDLNGALKYGTQFFFKSGGINAVLSTGTTAALNQSFPGFVLAGHGADGAPLAIS
EEEEEEEECCCHHHHCCEEEEECCCCEEEEECCCCHHHCCCCCCEEEECCCCCCCHHHHH
ALQSVTQVQVLSSPQLLVQNGRTANLLVGNLVPYLSQTSQSTLTTGAPVINSVNYQETGV
HHHHHHHHHHHCCCHHEEECCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCE
ILQITPHISSDGLVALTVSQQVSNVAPSVTTQGLNSPTFSERAVSSSVVVHDGQTIGLAG
EEEEECCCCCCCEEEEEECHHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEECCCEEEEEE
LITDNVQRGNSGLPFLKDVPLLGPLFGTQDNSRARQELLVLITPHVVHDATDAAALTSDL
EEECCHHCCCCCCCHHHCCCCCCCCCCCCCCCHHHEEEEEEECCHHHHCCHHHHHHHHHH
EQALPNAANVPAELNGLPMDGSADPQAALRRRLGLH
HHHCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]