Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

Click here to switch to the map view.

The map label for this gene is 148259495

Identifier: 148259495

GI number: 148259495

Start: 532266

End: 533063

Strand: Reverse

Name: 148259495

Synonym: Acry_0479

Alternate gene names: NA

Gene position: 533063-532266 (Counterclockwise)

Preceding gene: 148259496

Following gene: 148259494

Centisome position: 15.73

GC content: 72.56

Gene sequence:

>798_bases
ATGAGCGCCACGGGGAACCGCACCCGGCAGATGCGGGCGGCGGTGCTCGCCCTCGCCGCGGCATCGCTCGCCGGCTGCGC
GGCGCCGCAAAGAATGGGTGCGAACGAACCGACGCTCGGCGCCAACACGCTGAACGTTGCCAGAACGGCGCTTGCGGGCA
ACCGGCCGGATCTCGCCCTGCATGTCGCCAACGCGGTGCTGAAGGTTGATCCTGGCAATGACGAGGCGCGGCTGGTGCAT
GGCGACGCCGCCTATCTGCTCGGCGACTGCCGGACGGCGTCGGCCGATTACCGGGCGGTGCTGAAGGCCGCGCCACACAC
GGCGGGAGCGGAGATCGGCCTCGGGCGCTGTGCGCTCCGCACGAATGGTCGGGGCGCGGTTGCTGCGTTCCGGCAGGCGG
CGGGCGACGATCCGCACAACGCCGTCGCCTTCAATGATCTCGGCGTCGCCCTTGCCAAGCGGGGCGCGTTCGGCGCCGCG
GTTCCGGCATTCCGCAAGGCGCTGGCGCTCCGCCCGTCGTTCGCGGCGGCGCGTGCCAATCTGGGGCTTGCGACCGCGCT
CGAAGGACAGCCTGGCGCCGGCGCGGCGATCATCGCGCCGCTCGCGCAGGGGGCGCAGGCCTCGGCGCCGGAACGCGCGA
ATTACGCCGCTGCGCTGGCGATGGCCGGGGATGAAGCCTCGGCGCAACGCGTGCTGAGCGCAGACATGCCGGCGGCCGAG
GCTCGCGACATGGTGGCACAGCTGGCGCGGATCACGACCGTGCCGCATGCCGGTCAACCGCCGCACGCGGCCAATTAA

Upstream 100 bases:

>100_bases
CGTCCGGCGCGGCGGGTAGCGCAGGCGGCGGCGGTACCTCGCTCGGCGGCGCGGGCGGCGGCCTGGCCGCGTCGTCCGGC
GGAATGGGAGGGAGCGGACA

Downstream 100 bases:

>100_bases
CGTGCCGGGCGCCGGCTCGTTGCCGGACGGCGCGGCTATTGTGCAACCGATGATGGCGGAGTGAGGCCTCACACGCGGCT
GGCGCAGCAGCGGTGGTTGC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSATGNRTRQMRAAVLALAAASLAGCAAPQRMGANEPTLGANTLNVARTALAGNRPDLALHVANAVLKVDPGNDEARLVH
GDAAYLLGDCRTASADYRAVLKAAPHTAGAEIGLGRCALRTNGRGAVAAFRQAAGDDPHNAVAFNDLGVALAKRGAFGAA
VPAFRKALALRPSFAAARANLGLATALEGQPGAGAAIIAPLAQGAQASAPERANYAAALAMAGDEASAQRVLSADMPAAE
ARDMVAQLARITTVPHAGQPPHAAN

Sequences:

>Translated_265_residues
MSATGNRTRQMRAAVLALAAASLAGCAAPQRMGANEPTLGANTLNVARTALAGNRPDLALHVANAVLKVDPGNDEARLVH
GDAAYLLGDCRTASADYRAVLKAAPHTAGAEIGLGRCALRTNGRGAVAAFRQAAGDDPHNAVAFNDLGVALAKRGAFGAA
VPAFRKALALRPSFAAARANLGLATALEGQPGAGAAIIAPLAQGAQASAPERANYAAALAMAGDEASAQRVLSADMPAAE
ARDMVAQLARITTVPHAGQPPHAAN
>Mature_264_residues
SATGNRTRQMRAAVLALAAASLAGCAAPQRMGANEPTLGANTLNVARTALAGNRPDLALHVANAVLKVDPGNDEARLVHG
DAAYLLGDCRTASADYRAVLKAAPHTAGAEIGLGRCALRTNGRGAVAAFRQAAGDDPHNAVAFNDLGVALAKRGAFGAAV
PAFRKALALRPSFAAARANLGLATALEGQPGAGAAIIAPLAQGAQASAPERANYAAALAMAGDEASAQRVLSADMPAAEA
RDMVAQLARITTVPHAGQPPHAAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26538; Mature: 26407

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSATGNRTRQMRAAVLALAAASLAGCAAPQRMGANEPTLGANTLNVARTALAGNRPDLAL
CCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEE
HVANAVLKVDPGNDEARLVHGDAAYLLGDCRTASADYRAVLKAAPHTAGAEIGLGRCALR
EEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEE
TNGRGAVAAFRQAAGDDPHNAVAFNDLGVALAKRGAFGAAVPAFRKALALRPSFAAARAN
ECCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHC
LGLATALEGQPGAGAAIIAPLAQGAQASAPERANYAAALAMAGDEASAQRVLSADMPAAE
CCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHEEEEEECCCHHHHHHHHHCCCCHHH
ARDMVAQLARITTVPHAGQPPHAAN
HHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SATGNRTRQMRAAVLALAAASLAGCAAPQRMGANEPTLGANTLNVARTALAGNRPDLAL
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHCCCCCCEEE
HVANAVLKVDPGNDEARLVHGDAAYLLGDCRTASADYRAVLKAAPHTAGAEIGLGRCALR
EEEEEEEEECCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEE
TNGRGAVAAFRQAAGDDPHNAVAFNDLGVALAKRGAFGAAVPAFRKALALRPSFAAARAN
ECCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHC
LGLATALEGQPGAGAAIIAPLAQGAQASAPERANYAAALAMAGDEASAQRVLSADMPAAE
CCEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHEEEEEECCCHHHHHHHHHCCCCHHH
ARDMVAQLARITTVPHAGQPPHAAN
HHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA