| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is mviN [H]
Identifier: 148243423
GI number: 148243423
Start: 2021183
End: 2022832
Strand: Direct
Name: mviN [H]
Synonym: SynRCC307_2324
Alternate gene names: 148243423
Gene position: 2021183-2022832 (Clockwise)
Preceding gene: 148243421
Following gene: 148243427
Centisome position: 90.84
GC content: 64.73
Gene sequence:
>1650_bases ATGCCGCAACCATCGATGGCTGAAGCCTCCCGCGGCAGCGGCGGCAATCTGCGCCGCATCGCCATGCTGGTGGCGATCGC CACGGCCCTGAGCAAGTTGGCGGGACTGTTTCGTCAGCAGGCCATTGCGGCGGCGTTTGGCGTTGGCGCCGCCTACGACG CGTTCAATTACGCCTATGTGTTGCCAGGGTTTTTGCTGATCCTGCTGGGCGGCATTAATGGCCCGTTCCACAGCGCCATG GTCAGCGTCATGGCCAAACGTGAGCGGCAGGACAGCGCGCAGCTGTTGGCTGCCATCAACACCTTGGTGGGCCTTGGACT GCTGGTGGTCACGCTGCTGTTGGTGCTGCTGGCCAATCCGTTGATCACCCTGGTGGGCCCAGGTCTCGATCCTGAATTGC ATGCCTTGGCCGTGCTGCAGCTGCGGCTGATGGCCCCCATGGCCCTACTAGCCGGCCTGATTGGTCTGGGCTTCGGTGCC CTCAATGCAGCCGATGTCTACTGGCTGCCAGCGATCAGCCCACTGCTCTCCAGCCTGGCGGTGCTGATTGGCTTGGGTCT GCTGTGGCTGCAGGCAGGCGCGGCCATCGGCACAGCCACCTGGGCATGGGCGGGGGCGGCCGTGCTGGCGATCAGCACCC TGGCGGGCGCCCTGCTGCAGTGGCTGGTGCAACTGCCGGCCCTTGCGAAGCAGGGCTTAGGGCAGCTGCGGCTGAACTTC CACTGGCGGCAGGCTGGCGTCCGCGAGGTGCTGCAGGTGATGTGGCCCGCCACGCTCTCCTCGGGGATGCTGCAAATCAA TGTTTATACCGACCTGTTTTTCGCCAGTGGCATCGCTGGCGCCGCAGCTGGTTTGGGGTATGCCGGGCTGCTGGTGCAAA CCCCTCTCGGGATTCTCTCCAACATGCTTTTGGTGCCCTTGCTGCCGGTCTTCGCGCGGCTGAGCGCACCGGAGCAGCGC AACGAGCTGATTGCTCGCATCCGCCAGGGGGTGATGCTCAGCAATGCCAGCATGCTGCCGCTGGGGGCGCTGATGGTCGC GCTGGCGGCTCCGATCGTGGCGCTGATTTATGAGCGCGGCAGCTTTGATGCCGCTGCAGCCCAATTGGTCGTCGGGATCC TGATGGCCTACGGCCTGGGCATGCCGGCCTATTTGGCGCGTGATGTGTTGGTGCGGGTGTTTTACGCGCTGGGTGACGGG CAAACCCCCTTCCGCATCTCCGTGGCCGGGATTGGTCTGAATGTGGGTTTCGACTGGTTGTTGGTGGGGGGACCCAGCCC CAGCGGGCTGATGGTGCCCTCTTTGAACGCAGGAGCACCAGGACTGGTGCTGGCCACCGTTGCCGTCAATGTGATCACCT GCCTGGTGCTGCTGCTGGCCCTGCAACGCAAGCTGGGGCGGCTGCCCCTCCAGATCTGGGGCCGCGACAGCCTGCTGCTC AGCCTCGCCGCCCTAGCCGCCGGCGTGATCGCCTGGGCCATGGCGCAATGGATTCAGTGGCCAAGCGATCTGCTGGGTTT GGTACTGCAGGTGGCGATCTGCGGTGGTGTGGGCGCTGGTCTCTATGGACTGCTGGCCAGCAGTTTTGGGGTTCCAGAAG CGCGCCAACTCAGCCGTCAGCTCTTAGCCAAGCTGCCAGGAGTCAGTTGA
Upstream 100 bases:
>100_bases GCTCAAAGCGCAAGACCTCGACAGATGGCATCAGGGCAGGCAAGCGACCGGGCCATGGTGACTGATCAACAGCGGCGAGT TCCCCCACAATCAGCTCTGC
Downstream 100 bases:
>100_bases CGGTGCGTTGATCACGCACGTGCACCGGCACCTCCACATGGCTACGCCCCACCATCGCTGGACCATCCACTGAAAAGATC CGCGCCTCAATTCCGAACTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 549; Mature: 548
Protein sequence:
>549_residues MPQPSMAEASRGSGGNLRRIAMLVAIATALSKLAGLFRQQAIAAAFGVGAAYDAFNYAYVLPGFLLILLGGINGPFHSAM VSVMAKRERQDSAQLLAAINTLVGLGLLVVTLLLVLLANPLITLVGPGLDPELHALAVLQLRLMAPMALLAGLIGLGFGA LNAADVYWLPAISPLLSSLAVLIGLGLLWLQAGAAIGTATWAWAGAAVLAISTLAGALLQWLVQLPALAKQGLGQLRLNF HWRQAGVREVLQVMWPATLSSGMLQINVYTDLFFASGIAGAAAGLGYAGLLVQTPLGILSNMLLVPLLPVFARLSAPEQR NELIARIRQGVMLSNASMLPLGALMVALAAPIVALIYERGSFDAAAAQLVVGILMAYGLGMPAYLARDVLVRVFYALGDG QTPFRISVAGIGLNVGFDWLLVGGPSPSGLMVPSLNAGAPGLVLATVAVNVITCLVLLLALQRKLGRLPLQIWGRDSLLL SLAALAAGVIAWAMAQWIQWPSDLLGLVLQVAICGGVGAGLYGLLASSFGVPEARQLSRQLLAKLPGVS
Sequences:
>Translated_549_residues MPQPSMAEASRGSGGNLRRIAMLVAIATALSKLAGLFRQQAIAAAFGVGAAYDAFNYAYVLPGFLLILLGGINGPFHSAM VSVMAKRERQDSAQLLAAINTLVGLGLLVVTLLLVLLANPLITLVGPGLDPELHALAVLQLRLMAPMALLAGLIGLGFGA LNAADVYWLPAISPLLSSLAVLIGLGLLWLQAGAAIGTATWAWAGAAVLAISTLAGALLQWLVQLPALAKQGLGQLRLNF HWRQAGVREVLQVMWPATLSSGMLQINVYTDLFFASGIAGAAAGLGYAGLLVQTPLGILSNMLLVPLLPVFARLSAPEQR NELIARIRQGVMLSNASMLPLGALMVALAAPIVALIYERGSFDAAAAQLVVGILMAYGLGMPAYLARDVLVRVFYALGDG QTPFRISVAGIGLNVGFDWLLVGGPSPSGLMVPSLNAGAPGLVLATVAVNVITCLVLLLALQRKLGRLPLQIWGRDSLLL SLAALAAGVIAWAMAQWIQWPSDLLGLVLQVAICGGVGAGLYGLLASSFGVPEARQLSRQLLAKLPGVS >Mature_548_residues PQPSMAEASRGSGGNLRRIAMLVAIATALSKLAGLFRQQAIAAAFGVGAAYDAFNYAYVLPGFLLILLGGINGPFHSAMV SVMAKRERQDSAQLLAAINTLVGLGLLVVTLLLVLLANPLITLVGPGLDPELHALAVLQLRLMAPMALLAGLIGLGFGAL NAADVYWLPAISPLLSSLAVLIGLGLLWLQAGAAIGTATWAWAGAAVLAISTLAGALLQWLVQLPALAKQGLGQLRLNFH WRQAGVREVLQVMWPATLSSGMLQINVYTDLFFASGIAGAAAGLGYAGLLVQTPLGILSNMLLVPLLPVFARLSAPEQRN ELIARIRQGVMLSNASMLPLGALMVALAAPIVALIYERGSFDAAAAQLVVGILMAYGLGMPAYLARDVLVRVFYALGDGQ TPFRISVAGIGLNVGFDWLLVGGPSPSGLMVPSLNAGAPGLVLATVAVNVITCLVLLLALQRKLGRLPLQIWGRDSLLLS LAALAAGVIAWAMAQWIQWPSDLLGLVLQVAICGGVGAGLYGLLASSFGVPEARQLSRQLLAKLPGVS
Specific function: Unknown
COG id: COG0728
COG function: function code R; Uncharacterized membrane protein, putative virulence factor
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mviN family [H]
Homologues:
Organism=Escherichia coli, GI1787309, Length=423, Percent_Identity=28.6052009456265, Blast_Score=116, Evalue=4e-27,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004268 [H]
Pfam domain/function: PF03023 MVIN [H]
EC number: NA
Molecular weight: Translated: 56952; Mature: 56821
Theoretical pI: Translated: 10.06; Mature: 10.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQPSMAEASRGSGGNLRRIAMLVAIATALSKLAGLFRQQAIAAAFGVGAAYDAFNYAYV CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LPGFLLILLGGINGPFHSAMVSVMAKRERQDSAQLLAAINTLVGLGLLVVTLLLVLLANP HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LITLVGPGLDPELHALAVLQLRLMAPMALLAGLIGLGFGALNAADVYWLPAISPLLSSLA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VLIGLGLLWLQAGAAIGTATWAWAGAAVLAISTLAGALLQWLVQLPALAKQGLGQLRLNF HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH HWRQAGVREVLQVMWPATLSSGMLQINVYTDLFFASGIAGAAAGLGYAGLLVQTPLGILS HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHH NMLLVPLLPVFARLSAPEQRNELIARIRQGVMLSNASMLPLGALMVALAAPIVALIYERG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC SFDAAAAQLVVGILMAYGLGMPAYLARDVLVRVFYALGDGQTPFRISVAGIGLNVGFDWL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEE LVGGPSPSGLMVPSLNAGAPGLVLATVAVNVITCLVLLLALQRKLGRLPLQIWGRDSLLL EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHH SLAALAAGVIAWAMAQWIQWPSDLLGLVLQVAICGGVGAGLYGLLASSFGVPEARQLSRQ HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHH LLAKLPGVS HHHHCCCCC >Mature Secondary Structure PQPSMAEASRGSGGNLRRIAMLVAIATALSKLAGLFRQQAIAAAFGVGAAYDAFNYAYV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LPGFLLILLGGINGPFHSAMVSVMAKRERQDSAQLLAAINTLVGLGLLVVTLLLVLLANP HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LITLVGPGLDPELHALAVLQLRLMAPMALLAGLIGLGFGALNAADVYWLPAISPLLSSLA HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VLIGLGLLWLQAGAAIGTATWAWAGAAVLAISTLAGALLQWLVQLPALAKQGLGQLRLNF HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEH HWRQAGVREVLQVMWPATLSSGMLQINVYTDLFFASGIAGAAAGLGYAGLLVQTPLGILS HHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHH NMLLVPLLPVFARLSAPEQRNELIARIRQGVMLSNASMLPLGALMVALAAPIVALIYERG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC SFDAAAAQLVVGILMAYGLGMPAYLARDVLVRVFYALGDGQTPFRISVAGIGLNVGFDWL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCEEE LVGGPSPSGLMVPSLNAGAPGLVLATVAVNVITCLVLLLALQRKLGRLPLQIWGRDSLLL EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHH SLAALAAGVIAWAMAQWIQWPSDLLGLVLQVAICGGVGAGLYGLLASSFGVPEARQLSRQ HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHH LLAKLPGVS HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]