| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148243385
Identifier: 148243385
GI number: 148243385
Start: 1985978
End: 1986511
Strand: Direct
Name: 148243385
Synonym: SynRCC307_2286
Alternate gene names: NA
Gene position: 1985978-1986511 (Clockwise)
Preceding gene: 148243382
Following gene: 148243388
Centisome position: 89.26
GC content: 63.48
Gene sequence:
>534_bases ATGGTTCCCCTGCGGCTGCTCCGCCCGCTCACCACCACTGGCCTGATGCTCGCGTTGGTGAGCTGCCAAACCAACATCAG CCAAGGGATGCGGGTTTATCCCCTCAGCCGCACGCAGCCCCACGACGGGCTGGCGGTGGTGAACCAACCGGATGGCTATG GGGTGCACATTTGGCTTGATACCGATACCCGCCAAGCCGGGGTCTGCCAACCGCTCTGGAATGCCGACCCAGCTCGCCTG TTCAACGGCAATGGCAGCGCCCCCTTCAGCTCAGGATTGGCCAGTCGAGACGAGTTTTTCGAGGTGGTGAGCAACGGCGA AGTGATGCGCCAATTGCGCAGCGAAACAGAAGCCCTCTGCAAAACCCGTGCGCCCAAGGCCACCTTCCAGTGGCGTGAGC CGCCCAAGCAAGCCGATCAAGTGGTGGTCGAGGAACTCCCGCCGCTTGGGGCCAGAGACCTCTGGCCTGACCCCAGCCAG CTGCGCAGCGATGAGCAGCAGATGCTGCAAAACGCGCCGCCAACTACCCCCTGA
Upstream 100 bases:
>100_bases CGTTCCCAGCGGCAGCATCATCGAAGCGGTGAGTGCCACAAGCAAAATCGCCAGATCTCGGCAAGCTAGAGGAACCCTCC AGCCGACTGGTCACTCCCGC
Downstream 100 bases:
>100_bases AGCTCTCCCAAACCACGGGCTCTGCCTCACGCCAATAGCGGCTGAAACGGCCCAAGCGGGGCGTGCGTGGCAGCTCCACA AACGGATCCCCATCGAGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MVPLRLLRPLTTTGLMLALVSCQTNISQGMRVYPLSRTQPHDGLAVVNQPDGYGVHIWLDTDTRQAGVCQPLWNADPARL FNGNGSAPFSSGLASRDEFFEVVSNGEVMRQLRSETEALCKTRAPKATFQWREPPKQADQVVVEELPPLGARDLWPDPSQ LRSDEQQMLQNAPPTTP
Sequences:
>Translated_177_residues MVPLRLLRPLTTTGLMLALVSCQTNISQGMRVYPLSRTQPHDGLAVVNQPDGYGVHIWLDTDTRQAGVCQPLWNADPARL FNGNGSAPFSSGLASRDEFFEVVSNGEVMRQLRSETEALCKTRAPKATFQWREPPKQADQVVVEELPPLGARDLWPDPSQ LRSDEQQMLQNAPPTTP >Mature_177_residues MVPLRLLRPLTTTGLMLALVSCQTNISQGMRVYPLSRTQPHDGLAVVNQPDGYGVHIWLDTDTRQAGVCQPLWNADPARL FNGNGSAPFSSGLASRDEFFEVVSNGEVMRQLRSETEALCKTRAPKATFQWREPPKQADQVVVEELPPLGARDLWPDPSQ LRSDEQQMLQNAPPTTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19634; Mature: 19634
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVPLRLLRPLTTTGLMLALVSCQTNISQGMRVYPLSRTQPHDGLAVVNQPDGYGVHIWLD CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCEEEEEEE TDTRQAGVCQPLWNADPARLFNGNGSAPFSSGLASRDEFFEVVSNGEVMRQLRSETEALC CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH KTRAPKATFQWREPPKQADQVVVEELPPLGARDLWPDPSQLRSDEQQMLQNAPPTTP HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MVPLRLLRPLTTTGLMLALVSCQTNISQGMRVYPLSRTQPHDGLAVVNQPDGYGVHIWLD CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCCCCEEEEEEE TDTRQAGVCQPLWNADPARLFNGNGSAPFSSGLASRDEFFEVVSNGEVMRQLRSETEALC CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH KTRAPKATFQWREPPKQADQVVVEELPPLGARDLWPDPSQLRSDEQQMLQNAPPTTP HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA