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The map label for this gene is rbgA [H]

Identifier: 148243330

GI number: 148243330

Start: 1935640

End: 1936503

Strand: Direct

Name: rbgA [H]

Synonym: SynRCC307_2231

Alternate gene names: 148243330

Gene position: 1935640-1936503 (Clockwise)

Preceding gene: 148243329

Following gene: 148243331

Centisome position: 87.0

GC content: 65.97

Gene sequence:

>864_bases
GTGAGCGCACCTGCGATCCAGTGGTATCCGGGCCACATTGCCAAGGCTGAACAGCAGCTCACCCAGCACCTCAGCAAGGT
GGATTTGGTGATTGAGGTGCGCGATGCGCGCATCCCGATGGCCACAGGCCATCCCCACCTGCAGCGCTGGATCAAGGGCA
AACAACACCTCTTGGTGATCAACCGGCGCGACATGGTGTCGGCGCAGGCGCGGCAGGCCTGGGATGAATGGTTCCGCAGC
CAGGGGCAGACGCCCTGGTGGTGCGACGCGAAAGCCGGCACTGGCGTCAAGCAGGTGCAACAGGCCGCCATCCGCGCTGG
CGAGCAACTCAATGAGCGGCGCCGCAAACGGGGCATGCGACCCAGGCCCGTGCGGGCCTTGACCCTGGGATTCCCCAATG
TGGGCAAATCAGCTTTGATTAACCGGCTGGTCCGCCAAAAGGTGGTCGACAGCGCCCGGCGCGCCGGTGTGACCCGCACG
CTGCGCTGGGTGCGGCTGGGCCAAAGCCTGGATTTATTGGATGCACCCGGTGTGCTTCCGCCGCGGCTGGATAACCAGCA
AGCCGCCCTGCATCTGGCCCTCTGCGATGACATTGGCCAGGCCGCCTACGACGGCGAAGGCGTCGCCCTGGCATTTCTCG
AAATGCTGGTGGCGCTGGAGCAGCAACCCGCTGCTGCCGTGCCGCCGCAACTGCTGGAGCAGCGCTACGGCATCGCCGTG
GAGGCTGGCCCTGGGGCTGCTAACGCCTGGTTGAGCGCAGCGGCGCTGAAGCACACCTCCGGCCAGAGCGAACGCATGGC
CCAACGGCTCCTCGATGACTACCGCCGTTCAGTGTTGGGGCCGATTGCCCTGGAGCTGCCATGA

Upstream 100 bases:

>100_bases
TGATCGTGATGGGCACCCGCGGCATCAACCTGGAGCAGGCCAGCAGCAGCACCGCAGCACGGGTAATCCAGCTAGCCCCC
TGCCCTGTTCTGGTGGTGCC

Downstream 100 bases:

>100_bases
ATGGCTTTGGCGAGGGGGAAGGCGAGCTACTGACGCTCCACTACCCCAAGCCCCTGCCGATGCGTCTGGACCGTTGGCTG
GTGAGCCAGCGGCCTGAGCA

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSAPAIQWYPGHIAKAEQQLTQHLSKVDLVIEVRDARIPMATGHPHLQRWIKGKQHLLVINRRDMVSAQARQAWDEWFRS
QGQTPWWCDAKAGTGVKQVQQAAIRAGEQLNERRRKRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVDSARRAGVTRT
LRWVRLGQSLDLLDAPGVLPPRLDNQQAALHLALCDDIGQAAYDGEGVALAFLEMLVALEQQPAAAVPPQLLEQRYGIAV
EAGPGAANAWLSAAALKHTSGQSERMAQRLLDDYRRSVLGPIALELP

Sequences:

>Translated_287_residues
MSAPAIQWYPGHIAKAEQQLTQHLSKVDLVIEVRDARIPMATGHPHLQRWIKGKQHLLVINRRDMVSAQARQAWDEWFRS
QGQTPWWCDAKAGTGVKQVQQAAIRAGEQLNERRRKRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVDSARRAGVTRT
LRWVRLGQSLDLLDAPGVLPPRLDNQQAALHLALCDDIGQAAYDGEGVALAFLEMLVALEQQPAAAVPPQLLEQRYGIAV
EAGPGAANAWLSAAALKHTSGQSERMAQRLLDDYRRSVLGPIALELP
>Mature_286_residues
SAPAIQWYPGHIAKAEQQLTQHLSKVDLVIEVRDARIPMATGHPHLQRWIKGKQHLLVINRRDMVSAQARQAWDEWFRSQ
GQTPWWCDAKAGTGVKQVQQAAIRAGEQLNERRRKRGMRPRPVRALTLGFPNVGKSALINRLVRQKVVDSARRAGVTRTL
RWVRLGQSLDLLDAPGVLPPRLDNQQAALHLALCDDIGQAAYDGEGVALAFLEMLVALEQQPAAAVPPQLLEQRYGIAVE
AGPGAANAWLSAAALKHTSGQSERMAQRLLDDYRRSVLGPIALELP

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=310, Percent_Identity=27.741935483871, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193211047, Length=204, Percent_Identity=31.8627450980392, Blast_Score=93, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6323744, Length=231, Percent_Identity=29.8701298701299, Blast_Score=73, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6320842, Length=178, Percent_Identity=25.2808988764045, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324381, Length=168, Percent_Identity=27.3809523809524, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI85815858, Length=206, Percent_Identity=30.5825242718447, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28572990, Length=204, Percent_Identity=27.4509803921569, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 31793; Mature: 31662

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPAIQWYPGHIAKAEQQLTQHLSKVDLVIEVRDARIPMATGHPHLQRWIKGKQHLLVI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRRDMVSAQARQAWDEWFRSQGQTPWWCDAKAGTGVKQVQQAAIRAGEQLNERRRKRGMR
CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PRPVRALTLGFPNVGKSALINRLVRQKVVDSARRAGVTRTLRWVRLGQSLDLLDAPGVLP
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
PRLDNQQAALHLALCDDIGQAAYDGEGVALAFLEMLVALEQQPAAAVPPQLLEQRYGIAV
CCCCCHHHHEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCEEE
EAGPGAANAWLSAAALKHTSGQSERMAQRLLDDYRRSVLGPIALELP
ECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEECCC
>Mature Secondary Structure 
SAPAIQWYPGHIAKAEQQLTQHLSKVDLVIEVRDARIPMATGHPHLQRWIKGKQHLLVI
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRRDMVSAQARQAWDEWFRSQGQTPWWCDAKAGTGVKQVQQAAIRAGEQLNERRRKRGMR
CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
PRPVRALTLGFPNVGKSALINRLVRQKVVDSARRAGVTRTLRWVRLGQSLDLLDAPGVLP
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
PRLDNQQAALHLALCDDIGQAAYDGEGVALAFLEMLVALEQQPAAAVPPQLLEQRYGIAV
CCCCCHHHHEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCEEE
EAGPGAANAWLSAAALKHTSGQSERMAQRLLDDYRRSVLGPIALELP
ECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]