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The map label for this gene is mpeC [H]

Identifier: 148243149

GI number: 148243149

Start: 1775376

End: 1776257

Strand: Direct

Name: mpeC [H]

Synonym: SynRCC307_2050

Alternate gene names: 148243149

Gene position: 1775376-1776257 (Clockwise)

Preceding gene: 148243148

Following gene: 148243150

Centisome position: 79.8

GC content: 52.95

Gene sequence:

>882_bases
ATGCTCGGCACAGAAACCAGCCTCAAAGGCCTCGCCTCAGCCACAAGAACAGGTCCTGCTTCTTACTCCACAACAAGCAA
GGCTGGCAAAAACACTGTTCACCGCACTGATGCAGGCGTAAGAGCCGAATACAAGCGTCAGCACTGTCTTGCTATGGGCA
TTGGCATTGGCCCACGTCTGCACTCTGAGTGCCCATTTGGTGTCACTGCTGACCAATTCAATCCTGACAACAGTGCCGCT
CTTGAGCGCGTCATCATTGCCGCTTATCGCCAGGTTTTCGGCAATCTGCCTCCCACTGAAAACCAGCGAGAAACCTCACT
GGAAGCTCGTCTGATGAATGGCGAGATCACCGTGCGTGATTTCGTCAATGGACTAGCCAAATCTGATTTCTACAAAGCAA
ACTTCTTCCATGCAGTCGGCGCCCAGCGAGGCATCGAGCTGAACTTCAAGCACCTACTTGGTCGCGCACCTTTGAACCAA
ACTGAGGTTCAAGCCCACATCAAAGTCCAAGCAGAAGCAGGTTTTGATGCACTGGTAGACGTAATCACTGATTCGGCAGA
GTATGCCGAAGTGTTTGGAGCTGACATTGTTCCCTACAACCGGAGCCAGGATTCCTATGCTGGGATGTTCACGCGGACAT
TCAATTTGATGCGTGAACTGGGCGGCAACAAAGTTGCAATCAGCGACAATGCACAGGGCCGCAATAGCCGGACCGTGAAC
CCACTGGCCATTGCCTCTCGCGAGAGCACCAAGCCCGGAACCTTCTCGTACCGATCGATTGCACGTACACCTGTGAAGCT
GCCTCAGCAGCAGTACTCCGGCCATCAAACTCCCAAGATGACTGATGATGTGCCCTTCCGTCCTTTTGGCGTTCATTTCT
GA

Upstream 100 bases:

>100_bases
TGTGACCTTGTCTAGTCACATCAATTGAGCGACAACGCTCAGTTAGATAGCGAAGATTAGGTCAGGACACCTACAAGCAA
ACCTCACCCCAATCCTCATC

Downstream 100 bases:

>100_bases
TTCTGAAATCAGAGCAAGGAACAACCACTCGGACCAGGCTCCCCGCTGTAGGCGGGGAGCTTTTTTATTGCGATGCAATG
CTCCTGGTAGAAGGATCATC

Product: C-phycoerythrin class II gamma chain, linker

Products: NA

Alternate protein names: L-R 32.1; Phycobilisome 32.1 kDa rod linker polypeptide; Phycoerythrin class II gamma chain, linker polypeptide [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MLGTETSLKGLASATRTGPASYSTTSKAGKNTVHRTDAGVRAEYKRQHCLAMGIGIGPRLHSECPFGVTADQFNPDNSAA
LERVIIAAYRQVFGNLPPTENQRETSLEARLMNGEITVRDFVNGLAKSDFYKANFFHAVGAQRGIELNFKHLLGRAPLNQ
TEVQAHIKVQAEAGFDALVDVITDSAEYAEVFGADIVPYNRSQDSYAGMFTRTFNLMRELGGNKVAISDNAQGRNSRTVN
PLAIASRESTKPGTFSYRSIARTPVKLPQQQYSGHQTPKMTDDVPFRPFGVHF

Sequences:

>Translated_293_residues
MLGTETSLKGLASATRTGPASYSTTSKAGKNTVHRTDAGVRAEYKRQHCLAMGIGIGPRLHSECPFGVTADQFNPDNSAA
LERVIIAAYRQVFGNLPPTENQRETSLEARLMNGEITVRDFVNGLAKSDFYKANFFHAVGAQRGIELNFKHLLGRAPLNQ
TEVQAHIKVQAEAGFDALVDVITDSAEYAEVFGADIVPYNRSQDSYAGMFTRTFNLMRELGGNKVAISDNAQGRNSRTVN
PLAIASRESTKPGTFSYRSIARTPVKLPQQQYSGHQTPKMTDDVPFRPFGVHF
>Mature_293_residues
MLGTETSLKGLASATRTGPASYSTTSKAGKNTVHRTDAGVRAEYKRQHCLAMGIGIGPRLHSECPFGVTADQFNPDNSAA
LERVIIAAYRQVFGNLPPTENQRETSLEARLMNGEITVRDFVNGLAKSDFYKANFFHAVGAQRGIELNFKHLLGRAPLNQ
TEVQAHIKVQAEAGFDALVDVITDSAEYAEVFGADIVPYNRSQDSYAGMFTRTFNLMRELGGNKVAISDNAQGRNSRTVN
PLAIASRESTKPGTFSYRSIARTPVKLPQQQYSGHQTPKMTDDVPFRPFGVHF

Specific function: This protein is a bile pigment-bearing rod linker polypeptide that associates with C-phycoerythrin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Periphery of the rods of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 32102; Mature: 32102

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGTETSLKGLASATRTGPASYSTTSKAGKNTVHRTDAGVRAEYKRQHCLAMGIGIGPRL
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCC
HSECPFGVTADQFNPDNSAALERVIIAAYRQVFGNLPPTENQRETSLEARLMNGEITVRD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCEEHHH
FVNGLAKSDFYKANFFHAVGAQRGIELNFKHLLGRAPLNQTEVQAHIKVQAEAGFDALVD
HHHHHHHCCCHHHHHHHHHCCCCCCEEEHHHHHCCCCCCHHEEEEEEEEEECCCHHHHHH
VITDSAEYAEVFGADIVPYNRSQDSYAGMFTRTFNLMRELGGNKVAISDNAQGRNSRTVN
HHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
PLAIASRESTKPGTFSYRSIARTPVKLPQQQYSGHQTPKMTDDVPFRPFGVHF
CEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLGTETSLKGLASATRTGPASYSTTSKAGKNTVHRTDAGVRAEYKRQHCLAMGIGIGPRL
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEECCCCCCC
HSECPFGVTADQFNPDNSAALERVIIAAYRQVFGNLPPTENQRETSLEARLMNGEITVRD
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCEEHHH
FVNGLAKSDFYKANFFHAVGAQRGIELNFKHLLGRAPLNQTEVQAHIKVQAEAGFDALVD
HHHHHHHCCCHHHHHHHHHCCCCCCEEEHHHHHCCCCCCHHEEEEEEEEEECCCHHHHHH
VITDSAEYAEVFGADIVPYNRSQDSYAGMFTRTFNLMRELGGNKVAISDNAQGRNSRTVN
HHHCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC
PLAIASRESTKPGTFSYRSIARTPVKLPQQQYSGHQTPKMTDDVPFRPFGVHF
CEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8425055; 8419325 [H]