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The map label for this gene is cpcS2 [H]

Identifier: 148243123

GI number: 148243123

Start: 1755609

End: 1756199

Strand: Direct

Name: cpcS2 [H]

Synonym: SynRCC307_2024

Alternate gene names: 148243123

Gene position: 1755609-1756199 (Clockwise)

Preceding gene: 148243121

Following gene: 148243124

Centisome position: 78.91

GC content: 63.45

Gene sequence:

>591_bases
ATGGATTGCATCACCGACGCCCTCAGTTTCTTTGGCCAAAGCTGTGGCCGCTGGCGCTCCCAACGCTCCCAGCACCATCT
CTTGCATCGCCGGGCGGAAGCCGGCGCTTCATTGGTGGAAGTGGCGATGGTGGAAGCCGATGACCCTCGGCTGAGCGCCC
TGGCCGAGCTGCACAAGATGGACCCCGGCGCGGTGGTGGGGGGCTGTCATGTGCGCTGGAGCGGCTCAATGGCCTGGGAC
CGAGCCGGGGAAAACCATGAAAGCGAAACGGTGTTTGCCCTGCTGCCCGACGACAGCGAAGGCTGCCAGGGCTTCCTCCT
GCGCGACATGGGGTATTCCGTGAAAGAACCAGTCGCCGGGCGCTTTCGCCTGGATGAGCAGAAAAGCCTTTGGCTGAGCA
CCAACTACGAAATGATGGACAGCGGCGAGTGCTTTTGGTTCGCCGGACCCAACACCAGGCTGCGCACCAGCACCGTGCAA
GGGCTCTCCAACACCGCCTCCCTCTGCATGGAAACCAGGGTCCTTGAGGACGCCCAACCGATGAGAGACCAGCAGCCCTC
GGCCCAAGCCAGCTCCCTGCTGGGCTGGTAA

Upstream 100 bases:

>100_bases
CCCGTCGCCAAAGCCCACTGGCGATGGTCCAGCAGAAGGCAGCCAACAGGGCCGCCACGACACCGATCAACATGGGGATC
GACCCGGCAGGCTGGACGCC

Downstream 100 bases:

>100_bases
CAAATACTTAGAAAAGCCGTCCGAAAAGTTACGGACTGTGATCGCGATTGAAAAGATTCGGCTCTCTTCCAGCCCCCACT
TCTACGATCAGCGTCGTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MDCITDALSFFGQSCGRWRSQRSQHHLLHRRAEAGASLVEVAMVEADDPRLSALAELHKMDPGAVVGGCHVRWSGSMAWD
RAGENHESETVFALLPDDSEGCQGFLLRDMGYSVKEPVAGRFRLDEQKSLWLSTNYEMMDSGECFWFAGPNTRLRTSTVQ
GLSNTASLCMETRVLEDAQPMRDQQPSAQASSLLGW

Sequences:

>Translated_196_residues
MDCITDALSFFGQSCGRWRSQRSQHHLLHRRAEAGASLVEVAMVEADDPRLSALAELHKMDPGAVVGGCHVRWSGSMAWD
RAGENHESETVFALLPDDSEGCQGFLLRDMGYSVKEPVAGRFRLDEQKSLWLSTNYEMMDSGECFWFAGPNTRLRTSTVQ
GLSNTASLCMETRVLEDAQPMRDQQPSAQASSLLGW
>Mature_196_residues
MDCITDALSFFGQSCGRWRSQRSQHHLLHRRAEAGASLVEVAMVEADDPRLSALAELHKMDPGAVVGGCHVRWSGSMAWD
RAGENHESETVFALLPDDSEGCQGFLLRDMGYSVKEPVAGRFRLDEQKSLWLSTNYEMMDSGECFWFAGPNTRLRTSTVQ
GLSNTASLCMETRVLEDAQPMRDQQPSAQASSLLGW

Specific function: Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR018536 [H]

Pfam domain/function: PF09367 CpeS [H]

EC number: NA

Molecular weight: Translated: 21773; Mature: 21773

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCITDALSFFGQSCGRWRSQRSQHHLLHRRAEAGASLVEVAMVEADDPRLSALAELHKM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCCHHHHHHHHHHHC
DPGAVVGGCHVRWSGSMAWDRAGENHESETVFALLPDDSEGCQGFLLRDMGYSVKEPVAG
CCCCEEECEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEHHHCCCCCCCCCCC
RFRLDEQKSLWLSTNYEMMDSGECFWFAGPNTRLRTSTVQGLSNTASLCMETRVLEDAQP
CEEECCCCCEEEECCCEEECCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
MRDQQPSAQASSLLGW
CCCCCCCHHHHHHCCC
>Mature Secondary Structure
MDCITDALSFFGQSCGRWRSQRSQHHLLHRRAEAGASLVEVAMVEADDPRLSALAELHKM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCCHHHHHHHHHHHC
DPGAVVGGCHVRWSGSMAWDRAGENHESETVFALLPDDSEGCQGFLLRDMGYSVKEPVAG
CCCCEEECEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEHHHCCCCCCCCCCC
RFRLDEQKSLWLSTNYEMMDSGECFWFAGPNTRLRTSTVQGLSNTASLCMETRVLEDAQP
CEEECCCCCEEEECCCEEECCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
MRDQQPSAQASSLLGW
CCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]