Click here to switch to the map view.

The map label for this gene is yebC [C]

Identifier: 148242932

GI number: 148242932

Start: 1594879

End: 1595640

Strand: Direct

Name: yebC [C]

Synonym: SynRCC307_1833

Alternate gene names: 148242932

Gene position: 1594879-1595640 (Clockwise)

Preceding gene: 148242931

Following gene: 148242934

Centisome position: 71.68

GC content: 63.39

Gene sequence:

>762_bases
ATGGCCGGCCACAGCAAATGGTCACAAATCAAGCGCACCAAAGCCGTTGTGGATGCCAAGCGAGGAGCGGTGTTCACCCG
GCTGGGGCGCGAGATCAGCGTGGCAGCCCGGGCTGGCGCCGACCCGGATGGCAACTTTCAGCTGCGCACCGCCATTAATA
AAGCCAAAGCAGCAGGCGTTCCGGCGGCCAATATCGAGCGCGCCATCGCCAAAGGCTGCGGAGCTGGCGGTGATGGCAGC
CAAGCCTTTGAGGAGATCCGCTACGAGGGCTACGGCCCTGGCGGGGTGGCCGTGTTGGTGGAGGTGCTCAGCGACAACCG
CAACCGCACGGCGGCAGAACTGCGGCTGGCCTTCAGCAAAAACGGCGGCAACCTCGGCGAGAGCGGCTGTGTTGGCTTTT
TGTTCAGTCACCGCAGCGAGGTGTCGCTGAATGCAACCAGCGCAGAAGGCATTGATGAAGACGCGCTGCTGGAAGACCTT
CTCGAGCTGGAGGCCGACGGCTATGAACTCACCGAAGAAGGAGCCCTGGTGCATGGTCCCTTCACCGCGCTGGAGATCCT
TCAAGACGGCCTGCGCCAGCGGGGCTGGAGCGTGCAGGACTGGGGCCACCAGTGGCATCCGCTCAACAGCATCGACCTGC
ACCAGAGCGATCAAGCTCGCCAGTGCCTGCAGCTGCTGGAGGCCCTCGAGGCTCTCGATGATGTGCGTAGCGTCAGCTGC
AATCTGGGGGAGTTCCCCGAGCTGGAGAACGAGCGTTCTTAG

Upstream 100 bases:

>100_bases
ACCCCAGGACCGCCAAAGCGCCTCGCGGCTAGCGCGCCGCGCCGGCATCCAGCAGGCTCAACTGCTCACCAGCTTTGATC
TGCAGGAGCGCTGAACTGCC

Downstream 100 bases:

>100_bases
GGGCTGAGCAAACCGCGGCAGAAGCGATCAGCCGCCGCCACCGCCTGCTGCCAGTTCTGCGCTTCGCTCACCCCAGAGCT
CTTACGCGGCTTGAAGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MAGHSKWSQIKRTKAVVDAKRGAVFTRLGREISVAARAGADPDGNFQLRTAINKAKAAGVPAANIERAIAKGCGAGGDGS
QAFEEIRYEGYGPGGVAVLVEVLSDNRNRTAAELRLAFSKNGGNLGESGCVGFLFSHRSEVSLNATSAEGIDEDALLEDL
LELEADGYELTEEGALVHGPFTALEILQDGLRQRGWSVQDWGHQWHPLNSIDLHQSDQARQCLQLLEALEALDDVRSVSC
NLGEFPELENERS

Sequences:

>Translated_253_residues
MAGHSKWSQIKRTKAVVDAKRGAVFTRLGREISVAARAGADPDGNFQLRTAINKAKAAGVPAANIERAIAKGCGAGGDGS
QAFEEIRYEGYGPGGVAVLVEVLSDNRNRTAAELRLAFSKNGGNLGESGCVGFLFSHRSEVSLNATSAEGIDEDALLEDL
LELEADGYELTEEGALVHGPFTALEILQDGLRQRGWSVQDWGHQWHPLNSIDLHQSDQARQCLQLLEALEALDDVRSVSC
NLGEFPELENERS
>Mature_252_residues
AGHSKWSQIKRTKAVVDAKRGAVFTRLGREISVAARAGADPDGNFQLRTAINKAKAAGVPAANIERAIAKGCGAGGDGSQ
AFEEIRYEGYGPGGVAVLVEVLSDNRNRTAAELRLAFSKNGGNLGESGCVGFLFSHRSEVSLNATSAEGIDEDALLEDLL
ELEADGYELTEEGALVHGPFTALEILQDGLRQRGWSVQDWGHQWHPLNSIDLHQSDQARQCLQLLEALEALDDVRSVSCN
LGEFPELENERS

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=250, Percent_Identity=25.2, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1788171, Length=249, Percent_Identity=41.3654618473896, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1788294, Length=241, Percent_Identity=32.7800829875519, Blast_Score=116, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6321458, Length=265, Percent_Identity=32.8301886792453, Blast_Score=116, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24583305, Length=247, Percent_Identity=27.9352226720648, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1833_SYNR3 (A5GV27)

Other databases:

- EMBL:   CT978603
- RefSeq:   YP_001228089.1
- ProteinModelPortal:   A5GV27
- SMR:   A5GV27
- STRING:   A5GV27
- GeneID:   5156727
- GenomeReviews:   CT978603_GR
- KEGG:   syr:SynRCC307_1833
- eggNOG:   COG0217
- HOGENOM:   HBG715231
- OMA:   GCVAYLF
- ProtClustDB:   PRK00110
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 27212; Mature: 27081

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGHSKWSQIKRTKAVVDAKRGAVFTRLGREISVAARAGADPDGNFQLRTAINKAKAAGV
CCCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHEEHHHCCCCCCCCEEEHHHHHHHHHCCC
PAANIERAIAKGCGAGGDGSQAFEEIRYEGYGPGGVAVLVEVLSDNRNRTAAELRLAFSK
CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHEEEEEC
NGGNLGESGCVGFLFSHRSEVSLNATSAEGIDEDALLEDLLELEADGYELTEEGALVHGP
CCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCCEEECC
FTALEILQDGLRQRGWSVQDWGHQWHPLNSIDLHQSDQARQCLQLLEALEALDDVRSVSC
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
NLGEFPELENERS
CCCCCCCCCCCCC
>Mature Secondary Structure 
AGHSKWSQIKRTKAVVDAKRGAVFTRLGREISVAARAGADPDGNFQLRTAINKAKAAGV
CCCHHHHHHHHHHHHHHHHCCHHHHHHCCHHEEHHHCCCCCCCCEEEHHHHHHHHHCCC
PAANIERAIAKGCGAGGDGSQAFEEIRYEGYGPGGVAVLVEVLSDNRNRTAAELRLAFSK
CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHEEEEEC
NGGNLGESGCVGFLFSHRSEVSLNATSAEGIDEDALLEDLLELEADGYELTEEGALVHGP
CCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCEECCCCCEEECC
FTALEILQDGLRQRGWSVQDWGHQWHPLNSIDLHQSDQARQCLQLLEALEALDDVRSVSC
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
NLGEFPELENERS
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA