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The map label for this gene is psbC [H]

Identifier: 148242795

GI number: 148242795

Start: 1480540

End: 1481925

Strand: Direct

Name: psbC [H]

Synonym: SynRCC307_1696

Alternate gene names: 148242795

Gene position: 1480540-1481925 (Clockwise)

Preceding gene: 148242794

Following gene: 148242797

Centisome position: 66.54

GC content: 60.89

Gene sequence:

>1386_bases
GTGGAAACGCCCTTTAATTCCTCCCTCGTTATCGGCGGTAAGGATCAGCCCTCCACTGGCTATGCCTGGTGGTCTGGTAA
CGCCCGTCTGATCAACCTCTCAGGGCGCCTCCTTGGCGCCCACGTTGCCCACGCCGGACTGATGGTCTTCTGGGCCGGCG
CCATGATGCTGTTCGAGGTGAGTCACTTCACCTTCGACAAGCCCATGTACGAACAGGGCTTCATCTGCATGCCTCACGTG
GCCACCCTTGGCTACGGCGTTGGCCCTGGCGGTGAAGTCACCAGCCTCTACCCCTTCTTTGTGGTGGGTGTGCTGCACCT
GATTAGTTCTGCCGTGCTCGGCCTTGGCGGCCTGTACCACGCCCTGCGTGGTCCTGAAATCCTGGAGAACTACTCCGCGT
TCTTCTCCCAGGACTGGCGCGATAAGAATCAGATGACCAACATCATTGGTTATCACCTGATTCTTCTTGGCGTCGGCGCC
CTGCTGCTGGTCTTCAAGGCCATGTTCTTCGGCGGTGTGTACGACACCTGGGCACCCGGTGGTGGGGACGTTCGTCTGAT
CACGAACCCCACCCTCAGCCCTGGTGTGATCTTCGGTTATCTGACCCGCGCCCCCTTTGGCGGCGAAGGCTGGATCATCG
GCGTGAACTCCATGGAAGACATCATTGGCGGCCACATCTGGCTCGGCCTGATCTGCATCTTCGGTGGCATCTGGCACACC
ATCACCAAGCCCTTCGGCTGGGTGCGTCGCGCCTTCATCTGGAACGGTGAGGCCTACCTGAGCTACAGCCTTGGAGCCCT
GAGCTTCATGAGCTTCATCTGCTCGGCCTTCATCTGGTTCAACAACACCGCTTACCCCTCTGAGTTCTGGGGCCCCACCA
ACGCTGAGGCGTCCCAAGCACAGAGCTTCACCTTCCTGGTCCGTGACCAGCGCATGGGTGCCAACATCGGTTCGGCCATG
GGCCCCACCGGTCTGGGTAAGTACCTGATGCGCTCCCCCACCGGCGAGATCATCTTTGGTGGTGAAACCATGCGTTTCTG
GGACTTCCGTGGTCCTTGGCTGGAGCCCCTGCGTGGCCCCAACGGCCTGAGCCTCGACAAGCTCCAGAACGACATTCAGC
CCTGGCAAGTTCGCCGCGCTGCTGAGTACATGACCCACGCTCCTAACGCGTCGATCAACTCTGTGGGCGGCATCATCACC
GAGCCCAACTCGGTGAACTACGTGAACCTGCGTCAGTGGCTGGGTGCAGCCCAGTTCTTCCTGGCCTTCTTCTTCCTCGT
TGGTCACCTCTGGCATGCGGGCCGCGCCCGTGCTGCTGCTGCTGGCTTCGAGAAAGGCATCGACCGCAAGGCCGAGCCTG
TGCTGGCCATGCCCGACCTGGACTGA

Upstream 100 bases:

>100_bases
TACACGAAGAACATTCTTCTGAACGAAGGCCTGCGCGCCTGGATGGCTCCGGCCGACCAACCCCACGAAAACTTCATCTT
CCCCGAAGAGGTCCTGCCCC

Downstream 100 bases:

>100_bases
TTTCAATCAGCTTCAAGCAATCGCATCAGCCTCCGCTTTGGCGGGGGCTTTTTTTATGGCTTCGGACGCAGCACCAACAC
GATGATCAACAGCATCGCCG

Product: photosystem II CP43 protein

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
METPFNSSLVIGGKDQPSTGYAWWSGNARLINLSGRLLGAHVAHAGLMVFWAGAMMLFEVSHFTFDKPMYEQGFICMPHV
ATLGYGVGPGGEVTSLYPFFVVGVLHLISSAVLGLGGLYHALRGPEILENYSAFFSQDWRDKNQMTNIIGYHLILLGVGA
LLLVFKAMFFGGVYDTWAPGGGDVRLITNPTLSPGVIFGYLTRAPFGGEGWIIGVNSMEDIIGGHIWLGLICIFGGIWHT
ITKPFGWVRRAFIWNGEAYLSYSLGALSFMSFICSAFIWFNNTAYPSEFWGPTNAEASQAQSFTFLVRDQRMGANIGSAM
GPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDIQPWQVRRAAEYMTHAPNASINSVGGIIT
EPNSVNYVNLRQWLGAAQFFLAFFFLVGHLWHAGRARAAAAGFEKGIDRKAEPVLAMPDLD

Sequences:

>Translated_461_residues
METPFNSSLVIGGKDQPSTGYAWWSGNARLINLSGRLLGAHVAHAGLMVFWAGAMMLFEVSHFTFDKPMYEQGFICMPHV
ATLGYGVGPGGEVTSLYPFFVVGVLHLISSAVLGLGGLYHALRGPEILENYSAFFSQDWRDKNQMTNIIGYHLILLGVGA
LLLVFKAMFFGGVYDTWAPGGGDVRLITNPTLSPGVIFGYLTRAPFGGEGWIIGVNSMEDIIGGHIWLGLICIFGGIWHT
ITKPFGWVRRAFIWNGEAYLSYSLGALSFMSFICSAFIWFNNTAYPSEFWGPTNAEASQAQSFTFLVRDQRMGANIGSAM
GPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDIQPWQVRRAAEYMTHAPNASINSVGGIIT
EPNSVNYVNLRQWLGAAQFFLAFFFLVGHLWHAGRARAAAAGFEKGIDRKAEPVLAMPDLD
>Mature_461_residues
METPFNSSLVIGGKDQPSTGYAWWSGNARLINLSGRLLGAHVAHAGLMVFWAGAMMLFEVSHFTFDKPMYEQGFICMPHV
ATLGYGVGPGGEVTSLYPFFVVGVLHLISSAVLGLGGLYHALRGPEILENYSAFFSQDWRDKNQMTNIIGYHLILLGVGA
LLLVFKAMFFGGVYDTWAPGGGDVRLITNPTLSPGVIFGYLTRAPFGGEGWIIGVNSMEDIIGGHIWLGLICIFGGIWHT
ITKPFGWVRRAFIWNGEAYLSYSLGALSFMSFICSAFIWFNNTAYPSEFWGPTNAEASQAQSFTFLVRDQRMGANIGSAM
GPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDIQPWQVRRAAEYMTHAPNASINSVGGIIT
EPNSVNYVNLRQWLGAAQFFLAFFFLVGHLWHAGRARAAAAGFEKGIDRKAEPVLAMPDLD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 50658; Mature: 50658

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPFNSSLVIGGKDQPSTGYAWWSGNARLINLSGRLLGAHVAHAGLMVFWAGAMMLFEV
CCCCCCCEEEECCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
SHFTFDKPMYEQGFICMPHVATLGYGVGPGGEVTSLYPFFVVGVLHLISSAVLGLGGLYH
HHHCCCCCCHHCCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRGPEILENYSAFFSQDWRDKNQMTNIIGYHLILLGVGALLLVFKAMFFGGVYDTWAPG
HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GGDVRLITNPTLSPGVIFGYLTRAPFGGEGWIIGVNSMEDIIGGHIWLGLICIFGGIWHT
CCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ITKPFGWVRRAFIWNGEAYLSYSLGALSFMSFICSAFIWFNNTAYPSEFWGPTNAEASQA
HHCHHHHHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHH
QSFTFLVRDQRMGANIGSAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGP
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCC
NGLSLDKLQNDIQPWQVRRAAEYMTHAPNASINSVGGIITEPNSVNYVNLRQWLGAAQFF
CCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHHHHH
LAFFFLVGHLWHAGRARAAAAGFEKGIDRKAEPVLAMPDLD
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCC
>Mature Secondary Structure
METPFNSSLVIGGKDQPSTGYAWWSGNARLINLSGRLLGAHVAHAGLMVFWAGAMMLFEV
CCCCCCCEEEECCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
SHFTFDKPMYEQGFICMPHVATLGYGVGPGGEVTSLYPFFVVGVLHLISSAVLGLGGLYH
HHHCCCCCCHHCCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALRGPEILENYSAFFSQDWRDKNQMTNIIGYHLILLGVGALLLVFKAMFFGGVYDTWAPG
HHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
GGDVRLITNPTLSPGVIFGYLTRAPFGGEGWIIGVNSMEDIIGGHIWLGLICIFGGIWHT
CCCEEEEECCCCCCHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
ITKPFGWVRRAFIWNGEAYLSYSLGALSFMSFICSAFIWFNNTAYPSEFWGPTNAEASQA
HHCHHHHHHHHHEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHH
QSFTFLVRDQRMGANIGSAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGP
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHCCCC
NGLSLDKLQNDIQPWQVRRAAEYMTHAPNASINSVGGIITEPNSVNYVNLRQWLGAAQFF
CCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHHHHH
LAFFFLVGHLWHAGRARAAAAGFEKGIDRKAEPVLAMPDLD
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231; 3130247 [H]