| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is fcbT3 [C]
Identifier: 148242750
GI number: 148242750
Start: 1446422
End: 1447798
Strand: Direct
Name: fcbT3 [C]
Synonym: SynRCC307_1651
Alternate gene names: 148242750
Gene position: 1446422-1447798 (Clockwise)
Preceding gene: 148242749
Following gene: 148242752
Centisome position: 65.01
GC content: 63.04
Gene sequence:
>1377_bases ATGGGATTTGAGCTGGAAGTTGCGGGCTGGGGCATTGCCTTTTTCCCCGGCGAGGTGCTCGCGCCATTGATGTTTTTGGC GCTGATTGCGGCGCTGCTCAGCGGCTATCCCGTCGCCTTTGGCCTGGGCGGTGTGGCCGTGATTTTTGGCCTGTTGGGCA TCGTCAGCGGCGTGATCGATCCGCGCTTTTTCAGCGCGCTGCAGCCGCGGATCTTCGGAATCATGAGCAACTTCACGTTG CTGGCGATTCCCACCTTCGTGTTCATGGGCGCGATGCTGCAGATCTCTGGCATCGCTGAACGGCTGCTGGAGGCCATGGG CCAACTGCTGGGCCAGCTGCGCGGCGGATTGGCGCTGGCGGTGGTGTTGGTGGGCAGCTTGATGGCAGCCACCACCGGCG TCACCGCCGCCACGGTCACGACGATGGGGCTGATCTCCCTGCCCGCGATGCTGCGCTCGGGCTACGACAAATCCTTTGCC TCAGGGGTGATCGTGGCCTCCGGCACGCTCGGCCAGCTCATTCCTCCCTCGATCGTGCTGGTGGTGCTCGGCGATCAGCT GGGCGTTTCGGTGGGTGATCTGTTTTTGGGTTCGCTGATCCCGGGGCTGTTGATGGCAGGGGCCTTTGCGCTCTATGTGC TGGTGGCCAGCCAGCTCAATCCACAACTGGCCCCAGAGCGCCTTGCGCGAACGGCAGCCCACGTGGCACCGGCTCAGCTG CTGCGTGTGCTGATTCCGCCTTTGGTACTGATCTTCTTGGTATTGGGCAGCATCTTTTTTGGCGTTGCCACCCCAACAGA AGCCGGCGCGCTCGGTGCTGTGGGCGCCATGGTGCTCGCGGCCATCGAAGGCGGCTTCAGCCGCAGCAACCTGGCCAAGG TGTGTGATGAAACCCTGCGGGTCACCGCCATGGTGATGGCGATCCTGCTGGGCTCCACCGCCTTTGCCCTGGTGTTCCGC AGCCTCGGCGGTGACGCCATGATCCGCGAGGTGCTGGTGAATCTGCCGGGGGGTCAGCTGGGCTTCCTGGTGGTGAGCAT GGCTGTGATTTTTGCCCTGGGCTTCTTCATCGATTTCTTTGAAATCGCCTTCATCGTGGTGCCGCTGCTGCTGCCCAGCG CCCGTGAATTGCTGGGGCCCGAAAGCCTGCTTTGGTTTGGAGTGTTGATCGGCGCCAACCTGCAAACCTCCTTCCTCACC CCACCGTTTGGCTTTGCCCTGTTTTATCTGCGCGGCGTGGCCCCCAAAGAGGTGAGCACCGCCGCGATCTACCGCGGCGT GTGGCCGTTCATCGCCGTGCAGGTGGCTGTGCTGGTGCTAATCATCCTGTTCCCAGCTCTGGTGAACACCCTGCCGGCCC TCTCCCAGGCCAGCTAA
Upstream 100 bases:
>100_bases AAACCCTGGTGCCCCTTGGCTTTTTGCTATTGGCCCTGCAAGGCATCCGTGAGGCCGTGGCCCTCAGGCAGCAGCTACGC CGCGGCGGAGGTCAGAGCTG
Downstream 100 bases:
>100_bases GGCTGCTGGGGAATCGCTGCCCCCTCAGGCCTGCGCGGATCAGCCACCCCCAAGCTGCCGCCTTCAGGCAGCACTTCCAC GCTGTTGGCCGAACCCATCG
Product: TRAP-type mannitol/chloroaromatic compound transport system, large permease component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MGFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVIDPRFFSALQPRIFGIMSNFTL LAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALAVVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFA SGVIVASGTLGQLIPPSIVLVVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLRVTAMVMAILLGSTAFALVFR SLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFFEIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLT PPFGFALFYLRGVAPKEVSTAAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS
Sequences:
>Translated_458_residues MGFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVIDPRFFSALQPRIFGIMSNFTL LAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALAVVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFA SGVIVASGTLGQLIPPSIVLVVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLRVTAMVMAILLGSTAFALVFR SLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFFEIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLT PPFGFALFYLRGVAPKEVSTAAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS >Mature_457_residues GFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVIDPRFFSALQPRIFGIMSNFTLL AIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALAVVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFAS GVIVASGTLGQLIPPSIVLVVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQLL RVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLRVTAMVMAILLGSTAFALVFRS LGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFFEIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLTP PFGFALFYLRGVAPKEVSTAAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS
Specific function: Unknown
COG id: COG4664
COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TRAP transporter large permease family [H]
Homologues:
Organism=Escherichia coli, GI48994950, Length=376, Percent_Identity=27.6595744680851, Blast_Score=99, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010656 - InterPro: IPR004681 [H]
Pfam domain/function: PF06808 DctM [H]
EC number: NA
Molecular weight: Translated: 47536; Mature: 47405
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVID CCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC PRFFSALQPRIFGIMSNFTLLAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALA HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFASGVIVASGTLGQLIPPSIVL HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCHHEE VVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL EEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VTAMVMAILLGSTAFALVFRSLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFF HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLTPPFGFALFYLRGVAPKEVST HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHH AAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure GFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVID CCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC PRFFSALQPRIFGIMSNFTLLAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALA HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFASGVIVASGTLGQLIPPSIVL HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCHHEE VVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL EEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH VTAMVMAILLGSTAFALVFRSLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFF HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH EIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLTPPFGFALFYLRGVAPKEVST HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHH AAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]