Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

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The map label for this gene is fcbT3 [C]

Identifier: 148242750

GI number: 148242750

Start: 1446422

End: 1447798

Strand: Direct

Name: fcbT3 [C]

Synonym: SynRCC307_1651

Alternate gene names: 148242750

Gene position: 1446422-1447798 (Clockwise)

Preceding gene: 148242749

Following gene: 148242752

Centisome position: 65.01

GC content: 63.04

Gene sequence:

>1377_bases
ATGGGATTTGAGCTGGAAGTTGCGGGCTGGGGCATTGCCTTTTTCCCCGGCGAGGTGCTCGCGCCATTGATGTTTTTGGC
GCTGATTGCGGCGCTGCTCAGCGGCTATCCCGTCGCCTTTGGCCTGGGCGGTGTGGCCGTGATTTTTGGCCTGTTGGGCA
TCGTCAGCGGCGTGATCGATCCGCGCTTTTTCAGCGCGCTGCAGCCGCGGATCTTCGGAATCATGAGCAACTTCACGTTG
CTGGCGATTCCCACCTTCGTGTTCATGGGCGCGATGCTGCAGATCTCTGGCATCGCTGAACGGCTGCTGGAGGCCATGGG
CCAACTGCTGGGCCAGCTGCGCGGCGGATTGGCGCTGGCGGTGGTGTTGGTGGGCAGCTTGATGGCAGCCACCACCGGCG
TCACCGCCGCCACGGTCACGACGATGGGGCTGATCTCCCTGCCCGCGATGCTGCGCTCGGGCTACGACAAATCCTTTGCC
TCAGGGGTGATCGTGGCCTCCGGCACGCTCGGCCAGCTCATTCCTCCCTCGATCGTGCTGGTGGTGCTCGGCGATCAGCT
GGGCGTTTCGGTGGGTGATCTGTTTTTGGGTTCGCTGATCCCGGGGCTGTTGATGGCAGGGGCCTTTGCGCTCTATGTGC
TGGTGGCCAGCCAGCTCAATCCACAACTGGCCCCAGAGCGCCTTGCGCGAACGGCAGCCCACGTGGCACCGGCTCAGCTG
CTGCGTGTGCTGATTCCGCCTTTGGTACTGATCTTCTTGGTATTGGGCAGCATCTTTTTTGGCGTTGCCACCCCAACAGA
AGCCGGCGCGCTCGGTGCTGTGGGCGCCATGGTGCTCGCGGCCATCGAAGGCGGCTTCAGCCGCAGCAACCTGGCCAAGG
TGTGTGATGAAACCCTGCGGGTCACCGCCATGGTGATGGCGATCCTGCTGGGCTCCACCGCCTTTGCCCTGGTGTTCCGC
AGCCTCGGCGGTGACGCCATGATCCGCGAGGTGCTGGTGAATCTGCCGGGGGGTCAGCTGGGCTTCCTGGTGGTGAGCAT
GGCTGTGATTTTTGCCCTGGGCTTCTTCATCGATTTCTTTGAAATCGCCTTCATCGTGGTGCCGCTGCTGCTGCCCAGCG
CCCGTGAATTGCTGGGGCCCGAAAGCCTGCTTTGGTTTGGAGTGTTGATCGGCGCCAACCTGCAAACCTCCTTCCTCACC
CCACCGTTTGGCTTTGCCCTGTTTTATCTGCGCGGCGTGGCCCCCAAAGAGGTGAGCACCGCCGCGATCTACCGCGGCGT
GTGGCCGTTCATCGCCGTGCAGGTGGCTGTGCTGGTGCTAATCATCCTGTTCCCAGCTCTGGTGAACACCCTGCCGGCCC
TCTCCCAGGCCAGCTAA

Upstream 100 bases:

>100_bases
AAACCCTGGTGCCCCTTGGCTTTTTGCTATTGGCCCTGCAAGGCATCCGTGAGGCCGTGGCCCTCAGGCAGCAGCTACGC
CGCGGCGGAGGTCAGAGCTG

Downstream 100 bases:

>100_bases
GGCTGCTGGGGAATCGCTGCCCCCTCAGGCCTGCGCGGATCAGCCACCCCCAAGCTGCCGCCTTCAGGCAGCACTTCCAC
GCTGTTGGCCGAACCCATCG

Product: TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 457

Protein sequence:

>458_residues
MGFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVIDPRFFSALQPRIFGIMSNFTL
LAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALAVVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFA
SGVIVASGTLGQLIPPSIVLVVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL
LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLRVTAMVMAILLGSTAFALVFR
SLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFFEIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLT
PPFGFALFYLRGVAPKEVSTAAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS

Sequences:

>Translated_458_residues
MGFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVIDPRFFSALQPRIFGIMSNFTL
LAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALAVVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFA
SGVIVASGTLGQLIPPSIVLVVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL
LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLRVTAMVMAILLGSTAFALVFR
SLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFFEIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLT
PPFGFALFYLRGVAPKEVSTAAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS
>Mature_457_residues
GFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVIDPRFFSALQPRIFGIMSNFTLL
AIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALAVVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFAS
GVIVASGTLGQLIPPSIVLVVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQLL
RVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLRVTAMVMAILLGSTAFALVFRS
LGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFFEIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLTP
PFGFALFYLRGVAPKEVSTAAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS

Specific function: Unknown

COG id: COG4664

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=376, Percent_Identity=27.6595744680851, Blast_Score=99, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 47536; Mature: 47405

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVID
CCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
PRFFSALQPRIFGIMSNFTLLAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFASGVIVASGTLGQLIPPSIVL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCHHEE
VVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL
EEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VTAMVMAILLGSTAFALVFRSLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLTPPFGFALFYLRGVAPKEVST
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
AAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GFELEVAGWGIAFFPGEVLAPLMFLALIAALLSGYPVAFGLGGVAVIFGLLGIVSGVID
CCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
PRFFSALQPRIFGIMSNFTLLAIPTFVFMGAMLQISGIAERLLEAMGQLLGQLRGGLALA
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVLVGSLMAATTGVTAATVTTMGLISLPAMLRSGYDKSFASGVIVASGTLGQLIPPSIVL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCHHEE
VVLGDQLGVSVGDLFLGSLIPGLLMAGAFALYVLVASQLNPQLAPERLARTAAHVAPAQL
EEECCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
LRVLIPPLVLIFLVLGSIFFGVATPTEAGALGAVGAMVLAAIEGGFSRSNLAKVCDETLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
VTAMVMAILLGSTAFALVFRSLGGDAMIREVLVNLPGGQLGFLVVSMAVIFALGFFIDFF
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
EIAFIVVPLLLPSARELLGPESLLWFGVLIGANLQTSFLTPPFGFALFYLRGVAPKEVST
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHH
AAIYRGVWPFIAVQVAVLVLIILFPALVNTLPALSQAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]